Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01308 ATGGAGTTGTTGTCTGATACAATCATTGCAGCCATGTATAATGGGAGATTCTGCACTGATCGTGGAGTTAAGGCTCCACTTGGATATGTTGAAACTGATCCTTCTGGTCGATATGGGCGTTTCAGGGATGTTCTTGGCAAAGGAGCTATGAAGACTGTGTATAGGGCATTTGATGAGGTTCTGGGGATTGAAGTGGCTTGGAACCAAGTCCATCTAGGTGATGTCTTTCATTCACCAGATCAACTTCAGCGCCTATATTCAGAGGTTCATCTCCTTAAGCACCTTGACCATGAATCTATGATGATCTTCTATGGTTCTTGGATTGATGTCAATTGCAGAACCTTCAACTTCATCACTGAATTGTTCACCTCAGGCACCCTTAGAGAGTACAGGCAAAAGTATAGGAGAGTAGATATGAGGGCAGTGAAAAATTGGGCTTGCCAGATTCTAAGGGGTTTGGAGTATTTACACAGCCATAATCCACCTGTAATACATAGAGACCTCAAGTGTGATAATATCTTTGTTAATGGCCATATGGGGCAGGTCAAGATTGGTGACTTAGGCCTGGCAGCTATACTTCGTAGCTCCCAACATGCTCACAGTGTCATAGGCACACCAGAGTTCATGGCACCAGAACTGTATGAAGAGAAATATAATGAACTGGTAGATGTATACTCATTTGGGATGTGTATGATAGAGATGCTTACTCTTGAGTTCCCATATAGTGAATGCTCCAATCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCAGATGCATTTTACAGAATCCAAGATTTGGAAGCCCAGAGATTTGTGAAAAGATGTTTGTCAAATGTCTCAAAGAGACCATCAGCAGAGGAGCTCTTATTGGACCCATTTTTAGCCATGGAGCAACTTGAATTGTCATTTCCAAGCACACCATTATCTACAAATCAAAGTCTTGTGCTTCATTCAACTGCAGCAATTGCCAATAAGCATCTTTTAATAGGTGATCTGACAAAGAGCACAGATATGACAATCACTGGATCAATAAATGAAGATAATAACACAATTTTCCTTAAAGTGCGGATATCTGATGAAATGGGGCATACAAGACATGTATTCTTCCCATTTGACACTAAAAAAGACACTGCCTTTGAGGTAGCAATGGAGATGGTACAAGAACTTGAAATTAGCCATTTGGAACCATCAGAGATTGCTGCAATGATTGATCATGAGATATCAGCTTTAGTTCCAACTTGGAGGGATAGGTGTAAGTGTAAGCATCAACGACAGCACAGCTTCAACTATGAAGATGATGAGGATAGCAATAATCACCATCCTTTCTTTTTCTCATCTTCTCCATCTTCCCCTCACGGTTCTCTGATTCCCAAGTCTGGTTCCTCCAGCTCCAAGAACCACTTCCATGGGAACCATTGCATAATTACTCAAGAATGGCCTCAAGATGATCACCTATTAATGAACGACGATGCAAGTTCTCTCAGCTCCATGAACTCCATCAAGTGTTCCAATATCCAATACTGTGACTCTAGCAACGAAGATGAGCAAGGCACAATAGTAGTAGATGGAGCTGAAAACAACAAAAAGTGCACAAAACCATGTCATAAGGAAGAAGGAGAAGTTAGTAATTTCACCAAACAGTTGTGCTACATGACAATGAACTCTTGCAGTTGCAGATATGGTGGATCAAGCCATGGATGGCCAAGGCTAACGAAGGTTCGTTCGTGCTTGGATGAGCGTAGAAGCCAACAACTTCTGCGCTCACAACTATTAGAGATGTATAAGTACAAGAGACGTATGTTTAACACAGTTGGGGCCACTGAGGGAATTGGGTTTCAACATCCAGATAAAGGTGGATGCTTTCCTCCTCGGAAATTCATATAG 1893 0.4168 MELLSDTIIAAMYNGRFCTDRGVKAPLGYVETDPSGRYGRFRDVLGKGAMKTVYRAFDEVLGIEVAWNQVHLGDVFHSPDQLQRLYSEVHLLKHLDHESMMIFYGSWIDVNCRTFNFITELFTSGTLREYRQKYRRVDMRAVKNWACQILRGLEYLHSHNPPVIHRDLKCDNIFVNGHMGQVKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEKYNELVDVYSFGMCMIEMLTLEFPYSECSNPAQIYKKVTSGKLPDAFYRIQDLEAQRFVKRCLSNVSKRPSAEELLLDPFLAMEQLELSFPSTPLSTNQSLVLHSTAAIANKHLLIGDLTKSTDMTITGSINEDNNTIFLKVRISDEMGHTRHVFFPFDTKKDTAFEVAMEMVQELEISHLEPSEIAAMIDHEISALVPTWRDRCKCKHQRQHSFNYEDDEDSNNHHPFFFSSSPSSPHGSLIPKSGSSSSKNHFHGNHCIITQEWPQDDHLLMNDDASSLSSMNSIKCSNIQYCDSSNEDEQGTIVVDGAENNKKCTKPCHKEEGEVSNFTKQLCYMTMNSCSCRYGGSSHGWPRLTKVRSCLDERRSQQLLRSQLLEMYKYKRRMFNTVGATEGIGFQHPDKGGCFPPRKFI. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01308 630 Gene3D Phosphorylase Kinase; domain 1 25 120 - -
Seca1g01308 630 Gene3D Transferase(Phosphotransferase) domain 1 122 303 - -
Seca1g01308 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Seca1g01308 630 SMART serkin_6 39 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01308 630 Pfam Protein kinase domain 43 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01308 630 CDD STKc_WNK 37 297 - -
Seca1g01308 630 FunFam Probable serine/threonine-protein kinase WNK1 24 120 - -
Seca1g01308 630 SUPERFAMILY Protein kinase-like (PK-like) 41 298 IPR011009 -
Seca1g01308 630 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 29 538 - -
Seca1g01308 630 ProSiteProfiles Protein kinase domain profile. 39 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01308 630 FunFam probable serine/threonine-protein kinase WNK9 122 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01308 Seca-Chr1 19227262 19232375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01308 27 441 MAP Kinase Kinase Kinase AT3G51630 67.225 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca1g01308 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01308 K08867 - gmx:100272206 901.353