Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca1g01303 | ATGATGTCTCGTGTCCACCATGACAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTCTTATGGTGATAGTTACAGAGTTATTGCCAGGGATGTCACTAAGAAAATATTTGATGAATGTACGTCCTAAACTACTAGACCTTCACGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGGCTACATGCCAATGGGATCATTCATAGAGATCTGAAACCCGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTTACTGAAATGATGACCGCAGAAACAGGAACTTACCGATGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGCCAGGGAGAGAAAAAACACTATAACAATAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGGATGTCCAATTTACAAGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAGTCTTCCAGATGATATATCCCCTGATCTTGCTTATGTCATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCAAGCTTTAGTCAGATCATCCGGATGCTCAACGCGTTTCTCTTCACACTCTCACCACCATCTCCTCCTTTGCCAGAACCTGACAGTGATCCTGAGGCAGTAGCAACAACAAGTAATGGTACCATTACTGAGTGTTCTGCCCGAAACAAAGGAAAGTTTGCTTTTCTTCGCCAGTTGTTTTCTTCAAAAAGGATAAAAAACTAA | 807 | 0.4164 | MMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMNVRPKLLDLHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSLPDDISPDLAYVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPEPDSDPEAVATTSNGTITECSARNKGKFAFLRQLFSSKRIKN. | 269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca1g01303 | 268 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 70 | 82 | IPR008271 | GO:0004672|GO:0006468 | |
| Seca1g01303 | 268 | SMART | serkin_6 | 1 | 215 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca1g01303 | 268 | PRINTS | Tyrosine kinase catalytic domain signature | 182 | 204 | IPR001245 | GO:0004672|GO:0006468 | |
| Seca1g01303 | 268 | PRINTS | Tyrosine kinase catalytic domain signature | 138 | 160 | IPR001245 | GO:0004672|GO:0006468 | |
| Seca1g01303 | 268 | PRINTS | Tyrosine kinase catalytic domain signature | 64 | 82 | IPR001245 | GO:0004672|GO:0006468 | |
| Seca1g01303 | 268 | PRINTS | Tyrosine kinase catalytic domain signature | 26 | 39 | IPR001245 | GO:0004672|GO:0006468 | |
| Seca1g01303 | 268 | Pfam | Protein tyrosine and serine/threonine kinase | 1 | 211 | IPR001245 | GO:0004672|GO:0006468 | |
| Seca1g01303 | 268 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 212 | - | - | |
| Seca1g01303 | 268 | FunFam | serine/threonine-protein kinase HT1 | 31 | 225 | - | - | |
| Seca1g01303 | 268 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 235 | IPR011009 | - | |
| Seca1g01303 | 268 | ProSiteProfiles | Protein kinase domain profile. | 1 | 215 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca1g01303 | 268 | CDD | STKc_MAP3K-like | 1 | 211 | - | - | |
| Seca1g01303 | 268 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 218 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca1g01303 | Seca-Chr1 | 19120000 | 19124004 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca1g01303 | 1 | 265 | MAP Kinase Kinase Kinase | AT5G01850 | 73.793 | 9.88e-146 | 410 |
Transcription factors information