Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01302 ATGGGTCGTATGCACAGTCGTGGGTTGGTGCCACTGCCACCTCTTTCTTTCGCTGTTGAAGAGAATATATGCAAGTTCGCGAAGAAGGGTTTGACGCCATCTCAAATTGGTGTCATTCTCCGAGATTCTCATGGCATTGCTCAGGTCAACAGCGTCACTGGCAGCAAAATCCTCCGCATCCTCAAAGCTCACGGTCTCTCTCTATTTCTTTCTGCCTCTCTGTTTTTCAATAGTCATCTTCCTCATTTGACACACACCGAGACAAGGACCGGCGCTGCTGCCGTGCCATCCGTTCGTGCCTCCATCGTTCACTCGTTCGTGCCTCCGTCGTTCGCTCGTTCGAGCCTCCGTCCTCTTCCACGTCGTGCTTCGTGCGTCCGTCTCCAGTCAAGCACAGCAGGTCCGTCTCCGCGAACAGATTCGTTCTCCAGTCAAGCTTCTGAAATTGTGAAAGTTCTGCAGAGTATTTTTATCAACCAAGATCAGGAAATGTACTATGAAGAAACAGATAGGCCAGCACATGCACGCACGTCTAATTTTAATGAGGAACTTGGTCAGGGTCGTGGTATGACAGAAGTGGAGAAAGCACTTGCTAGAAGAGGGAAAAATGTGGAATCTGAGGTTGATGGTTTATCATCTGATGTCTTGGGTCAGAATAGTGATGCTGTGGACTCTAAAAAGCCAATTAAGGGCTTTAACTTTAGAGATGAACGCATAATGAGTGGGAAATGGGTTAATGAACCACATCCAGACATCATACAGAAATTCTTTCGAGTTTTAGCTATTTGTCATACAGCTATTCCAGAAGAACATAAAGAATCAGGAGAAATTTCTTATGAAGCTGAGTCACCAGATGAAGCAGCATTTGTCATAGCCGCAAAGGAGCTTGGTTTTGAGTTTTTCGCAAGGACACAAACAAGCATGTCATTGCATGAATTAAATTATGGAAGTGGAAAAAAGGTTGACAGGTTTGAACCTGTTTGA 984 0.4543 MGRMHSRGLVPLPPLSFAVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLSLFLSASLFFNSHLPHLTHTETRTGAAAVPSVRASIVHSFVPPSFARSSLRPLPRRASCVRLQSSTAGPSPRTDSFSSQASEIVKVLQSIFINQDQEMYYEETDRPAHARTSNFNEELGQGRGMTEVEKALARRGKNVESEVDGLSSDVLGQNSDAVDSKKPIKGFNFRDERIMSGKWVNEPHPDIIQKFFRVLAICHTAIPEEHKESGEISYEAESPDEAAFVIAAKELGFEFFARTQTSMSLHELNYGSGKKVDRFEPV. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01302 327 Gene3D - 21 67 - -
Seca1g01302 327 Pfam Ribosomal S13/S15 N-terminal domain 19 46 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca1g01302 327 SMART Ribosomal_S13_N_2 1 46 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca1g01302 327 FunFam 40S ribosomal protein S13 21 67 - -
Seca1g01302 327 Gene3D - 219 324 IPR023299 GO:0000166
Seca1g01302 327 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 148 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01302 Seca-Chr1 19083376 19087208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01302 148 323 Primary Pumps ATPases AT3G27870 56.796 5.49e-70 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01302 K01530 - gmx:100779714 288.5