Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g01299 | ATGCAGCGCCGTTTTCTTGACACCACCGAGCTAACCATGCCACCGTCTTATGGGAACAACAACACCCATGAACCTTTCATCAACGACACAAACTTCGACACCAACATGGTGATCATATTAGCAGCACTTTTATGCGCATTGATATGTGCCTTGGGTTTGAACTCCATAGCGCGTTGTGCTCTGCGTTGTAGCCGGAGATTCTCCCAAGAGACGCCGGAGCAAGCGGCGGCGAGGCTCGCCGCCACAGGGCTGAAGAAACGGGACCTCATCCAGATTCCGGTGGCGGTGTACGGCTACGGAGAGAATATTCCGGCGACGGAGTGCCCCATATGCTTAGCGGAGTTCGAGAAAGGGGACAAGCTTAGAATGCTGCCAAAGTGCAATCACGGGTTTCATGTGAGGTGCATAGACACGTGGCTGGTGTCGCATTCTTCTTGCCCCAATTGTCGCCATTCACTGCTAGAGAAACAACAACCTACTACTACCGTTTCTTCTTCGACTTCTGGGGTCGCCGGAGATGGGTTGCCGGAAAATGGATCCGGCGGGGGAAGCAGCGTCGCGGTGACTGTCGAGCAGGCAAGTTGA | 585 | 0.5419 | MQRRFLDTTELTMPPSYGNNNTHEPFINDTNFDTNMVIILAALLCALICALGLNSIARCALRCSRRFSQETPEQAAARLAATGLKKRDLIQIPVAVYGYGENIPATECPICLAEFEKGDKLRMLPKCNHGFHVRCIDTWLVSHSSCPNCRHSLLEKQQPTTTVSSSTSGVAGDGLPENGSGGGSSVAVTVEQAS. | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g01299 | 194 | SMART | ring_2 | 108 | 149 | IPR001841 | - | |
Seca1g01299 | 194 | Pfam | Ring finger domain | 107 | 150 | IPR001841 | - | |
Seca1g01299 | 194 | CDD | RING-H2_EL5-like | 107 | 150 | - | - | |
Seca1g01299 | 194 | ProSiteProfiles | Zinc finger RING-type profile. | 108 | 150 | IPR001841 | - | |
Seca1g01299 | 194 | SUPERFAMILY | RING/U-box | 102 | 156 | - | - | |
Seca1g01299 | 194 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 160 | IPR013083 | - | |
Seca1g01299 | 194 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 3 | 166 | IPR044602 | GO:0016567|GO:0016740 | |
Seca1g01299 | 194 | MobiDBLite | consensus disorder prediction | 157 | 173 | - | - | |
Seca1g01299 | 194 | MobiDBLite | consensus disorder prediction | 157 | 194 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g01299 | Seca-Chr1 | 19000944 | 19001528 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g01299 | 27 | 164 | C3H Transcription Factor Family | AT3G10910 | 63.946 | 5.96e-58 | 178 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g01299 | K19040 | - | gmx:100810195 | 259.225 |