Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01299 ATGCAGCGCCGTTTTCTTGACACCACCGAGCTAACCATGCCACCGTCTTATGGGAACAACAACACCCATGAACCTTTCATCAACGACACAAACTTCGACACCAACATGGTGATCATATTAGCAGCACTTTTATGCGCATTGATATGTGCCTTGGGTTTGAACTCCATAGCGCGTTGTGCTCTGCGTTGTAGCCGGAGATTCTCCCAAGAGACGCCGGAGCAAGCGGCGGCGAGGCTCGCCGCCACAGGGCTGAAGAAACGGGACCTCATCCAGATTCCGGTGGCGGTGTACGGCTACGGAGAGAATATTCCGGCGACGGAGTGCCCCATATGCTTAGCGGAGTTCGAGAAAGGGGACAAGCTTAGAATGCTGCCAAAGTGCAATCACGGGTTTCATGTGAGGTGCATAGACACGTGGCTGGTGTCGCATTCTTCTTGCCCCAATTGTCGCCATTCACTGCTAGAGAAACAACAACCTACTACTACCGTTTCTTCTTCGACTTCTGGGGTCGCCGGAGATGGGTTGCCGGAAAATGGATCCGGCGGGGGAAGCAGCGTCGCGGTGACTGTCGAGCAGGCAAGTTGA 585 0.5419 MQRRFLDTTELTMPPSYGNNNTHEPFINDTNFDTNMVIILAALLCALICALGLNSIARCALRCSRRFSQETPEQAAARLAATGLKKRDLIQIPVAVYGYGENIPATECPICLAEFEKGDKLRMLPKCNHGFHVRCIDTWLVSHSSCPNCRHSLLEKQQPTTTVSSSTSGVAGDGLPENGSGGGSSVAVTVEQAS. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01299 194 SMART ring_2 108 149 IPR001841 -
Seca1g01299 194 Pfam Ring finger domain 107 150 IPR001841 -
Seca1g01299 194 CDD RING-H2_EL5-like 107 150 - -
Seca1g01299 194 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Seca1g01299 194 SUPERFAMILY RING/U-box 102 156 - -
Seca1g01299 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 160 IPR013083 -
Seca1g01299 194 PANTHER RING-H2 FINGER PROTEIN ATL78 3 166 IPR044602 GO:0016567|GO:0016740
Seca1g01299 194 MobiDBLite consensus disorder prediction 157 173 - -
Seca1g01299 194 MobiDBLite consensus disorder prediction 157 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01299 Seca-Chr1 19000944 19001528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01299 27 164 C3H Transcription Factor Family AT3G10910 63.946 5.96e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01299 K19040 - gmx:100810195 259.225