Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01287 ATGTGTCATCACTCTTTGAAGATGATGCAATTCAGCATATGTTTGTTGTTTCTGATTCTCTTTTCTCCAGTGCTCTCTGTGGACCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTCTTCAAGGCTGGTTTGCAAGACCCAAAGCATAGATTGTCTTCATGGAATGAAGATGATAACAGTCCTTGCAACTGGGAAGGTGTCAAATGTGATCCTTTATCCAACAGGGTCTCTGCTCTTGTCCTTGATGGGTTTTCTCTTTCTGGGCATGTTGATAGAGGCCTCTTGAGATTGCAATTCCTTCAAATTCTCTCACTTTCTGGGAATAACTTCACAGGACCCATAAACCCTGATCTTCCTCGCCTTGGGAGTTTGCAAGTTGTTGACTTGAGTGATAACAATCTCTCTGGGACAATCCCAGAAGGGTTTTTCCAACAATGTGGGTCTCTGAGAGCAGTTTCCTTTGCAAAGAACAACCTTACAGGTAAGATTCCTGATTCCTTGAGCTACTGCTCTTCATTGACAACTGTTAACTTCTCCTCTAATAAGCTTTATGGGGAATTGCCATCTGGGGTGTGGTACTTGAGGGGTCTACAGTCACTTGATCTGTCAAATAACTTGCTTGAGGGAGTGATTCCTGAAGGAATTCAAAATCTGTATGATATGAGGGAGTTGAGTCTACAGAAGAATAGATTCACTGGCAAGCTTCCTGGGGATATTGGAGGCTGCATACTTTTGAAATCACTTGACTTGAGTGACAATTTTCTCTCTGGGGAACTGCCTCATTCAATGCAAAGACTCACTTCATGCACATCACTCAGTTTGCAGGGAAATTCATTCATAGGAGGCATTCCTGACTGGATTGGAGAGTTGAAAGATCTAGAAATAATGGACCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAAGTCTTTAGGAAATCTAGAATCACTGCATAGATTAAATTTATCCAGGAATCAGTTCACAGGAAACTTGCCTGATTCAATGGTAAACTGCACTAAGCTTTTGGCTCTTGATATTAGCAGCAATCAGTTATCTGGCCATCTTCCTCCATGGATTTTTAGGATGGGTTTACAAAGTATCTCTCTTTCTGGGAATAGCTTTGGTAAGGGCAATCCTTCACTCAGGTCCACACCTGCATCTTATCATGGTCTAGAGGTTTTGGATTTATCATCCAATGCATTTTTTGGTGAAATTCCATCTGGCATTGGGGGTCTCAGTAGCCTGCAGGTCTTAAATATGTCCACCAACAATATCTCTGGTTCTATTCCTGTGGGCATAGGAGAACTTAAATCTTTATACATTGTTGACTTGAGTGACAACAAGCTTAATGGAAGCATCCCATCTGAAATAGAAGGTGCAATTTCACTCAGTGAACTGAGGCTACAAAAGAACTTCCTAAGTGGGAGAATTCCAGCTCAAATTGAAAAGTGTTCATCTCTAACATCTTTGATTGTTTCTCACAACAAGCTTAGTGGTTCAATCCCTGCAGCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTCTACCCAAGGAACTGACAAATCTTTCCCATCTTTCATCATTTAATGTATCTTACAACCACCTTGAAGGTGAGCTACCAGTAGGTGGCTTCTTCAATACTATATCCTCATCATCTGTCTCTGGTAACCCATTGTTGTGTGGTTCTGTTGTCAACCAGTCTTGCCCATCTGTTCATCCCAAACCTATTGTCTTAAATCCCAATTCTTCAGGTTCCAACTCAAGCATTTCCTCACAAAATCATCGACACAAGATCATACTCAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCTATTACTGTCCTAAATATGCATGTGCGTTCATCCATGGCTCCTGCTGCTGCTCCATTTGCATTCTCTGGTGGTGAGGACTACAGCAATTCGCCGGCGAATGATCCAAACTATGGCAAGCTTGTCATGTTTGATGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTTCTTAATAAAGACAGTGAAATAGGTCGCGGTGGATTCGGAGTTGTTTATCGCACTTTCCTTCGAGATGGTCATTCAGTTGCAATCAAGAAGCTCACAGTCTCTAGTTTGATCAAGTCTCAAGAAGACTTTGAGAGGGAAGTGAGGAAGCTTGGGAAGATCAGGCACCAAAATCTTGTGGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAGCTTCTCATTTATGAGTACCTATCCAAAGGGAGTTTGCATAAGCTTCTACATGATGAACATAATAGCCAAAATGTGTTCTCTTGGAGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCTCATTTGCATCAAATGAACATAATCCACTACAATCTTAAATCAACCAATGTTCTGATTGATTGTTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAAACTATTGCCAATGCTAGATCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCACCTGAATTCGCGTGCCGCACGGTTAAGATAACTGAGAAATGTGATGTGTATGGTTTTGGAATCCTGGTTCTTGAAGTGGTGACTGGAAAAAGACCAGTGGAATACATGGAGGATGATGTGGTAGTTCTGTGTGACATGGTGAGGGGTGCATTAGAGGAAGGAAAGGTGGAACAATGTGTTGATGGGAGGCTACTTGGAAATTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTAATTTGTGCATCACAAGTGCCATCAAACCGTCCTGATATGGCTGAAGTGATCAACATATTAGAGTTAATCCAGTGTCCTTCAGAAGGGCAAGAGGAATTAGAATGA 2919 0.4166 MCHHSLKMMQFSICLLFLILFSPVLSVDPGFNDDVLGLIVFKAGLQDPKHRLSSWNEDDNSPCNWEGVKCDPLSNRVSALVLDGFSLSGHVDRGLLRLQFLQILSLSGNNFTGPINPDLPRLGSLQVVDLSDNNLSGTIPEGFFQQCGSLRAVSFAKNNLTGKIPDSLSYCSSLTTVNFSSNKLYGELPSGVWYLRGLQSLDLSNNLLEGVIPEGIQNLYDMRELSLQKNRFTGKLPGDIGGCILLKSLDLSDNFLSGELPHSMQRLTSCTSLSLQGNSFIGGIPDWIGELKDLEIMDLSANRFSGWIPKSLGNLESLHRLNLSRNQFTGNLPDSMVNCTKLLALDISSNQLSGHLPPWIFRMGLQSISLSGNSFGKGNPSLRSTPASYHGLEVLDLSSNAFFGEIPSGIGGLSSLQVLNMSTNNISGSIPVGIGELKSLYIVDLSDNKLNGSIPSEIEGAISLSELRLQKNFLSGRIPAQIEKCSSLTSLIVSHNKLSGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLSSFNVSYNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNQSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAITVLNMHVRSSMAPAAAPFAFSGGEDYSNSPANDPNYGKLVMFDGDADFADGAHNLLNKDSEIGRGGFGVVYRTFLRDGHSVAIKKLTVSSLIKSQEDFEREVRKLGKIRHQNLVALEGYYWTSSLQLLIYEYLSKGSLHKLLHDEHNSQNVFSWRQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVINILELIQCPSEGQEELE. 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01287 972 Gene3D Ribonuclease Inhibitor 32 308 IPR032675 -
Seca1g01287 972 Pfam Leucine rich repeat 271 328 IPR001611 GO:0005515
Seca1g01287 972 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515
Seca1g01287 972 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515
Seca1g01287 972 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Seca1g01287 972 Gene3D Phosphorylase Kinase; domain 1 679 764 - -
Seca1g01287 972 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Seca1g01287 972 ProSiteProfiles Protein kinase domain profile. 688 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01287 972 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 765 967 - -
Seca1g01287 972 SUPERFAMILY Protein kinase-like (PK-like) 690 962 IPR011009 -
Seca1g01287 972 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 682 764 - -
Seca1g01287 972 SUPERFAMILY L domain-like 49 380 - -
Seca1g01287 972 CDD STKc_IRAK 694 961 - -
Seca1g01287 972 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Seca1g01287 972 SUPERFAMILY L domain-like 284 564 - -
Seca1g01287 972 PANTHER LEUCINE RICH REPEAT KINASE 2 216 960 - -
Seca1g01287 972 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515
Seca1g01287 972 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515
Seca1g01287 972 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Seca1g01287 972 Gene3D Ribonuclease Inhibitor 309 585 IPR032675 -
Seca1g01287 972 Pfam Protein kinase domain 689 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01287 972 Gene3D Transferase(Phosphotransferase) domain 1 765 965 - -
Seca1g01287 972 SMART LRR_typ_2 533 557 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 195 218 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 291 314 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 315 339 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 413 437 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 509 532 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 219 243 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 340 363 IPR003591 -
Seca1g01287 972 SMART LRR_typ_2 122 146 IPR003591 -
Seca1g01287 972 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 311 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01287 Seca-Chr1 18844353 18848423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01287 8 969 Receptor kinase-like Gene Family AT5G01890 62.848 0.0 1163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca1g01287 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01287 - - gmx:100790365 1670.6