Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01279 ATGATTCAAAAGATGGAGAATCTAACTAGGAAGGCAATTGAGGAGCTTGTGAAAGGGCGTGAGGTTGCAAACCAACTTAGAAGTGTAATCAATGAAGGAGGCAATGATGGGTCAGTTATAACAACCCCATTTGCTGAACAACTTGTGAGAGAAGTGCTCATGTCCTTTACTAATTCTCTCTTGTTATTGAGCAATCCCTCTTCTGAATCAGTCTCTGATGTGCAAATCAGAGACTCTTCCAAGTCTGAGGACTCTCAAGAGAGTAATTGCAAGAGTTCCATCAATAAGGAAAGAAGAGGGTGTTACAAGAGAAGCAGGAGAACTTCACAAACATGGGAGAAAGAATCTGGGGCTCCAATTGAAGATGGACATCAATGGAGAAAGTATGGCCAAAAGACAATCTTGAATACCCAATACCCAAGGAACTATTACAGGTGCACTCACAAATATGATCAAGATTGCAAGGCAACAAAACAGGTTCAGAGAGTTCAAGAGGATCCACCCCTTTTTAAGACCACATACTATGGACACCACACTTGTAGAACCTTACAAAACCCTGAGATGATAGTGGATTCTGTTTCTCCTTCTGATCACTCTACCATGTTCCTTAGCTTTGACAACTCCCTCCCAACACCAGCCAAACAAGATTGTCCCTTTTTCTCATCCTCTTCTTTCCCATCATCATCTTCATCAGTGAAAAGGGAGTGCAAGGAAGAGGAGATTCATCCCTCATCTTCCTCCAATGATTACTTACTCTCTTCTGAGCTCACTTTTGATGATTCCACAAGACATGTCACTCTATCATCAACCCTTGACTCAGATCACATAGGGGTTATCCCTGATGTGTTGTATGACTCTGCTGAGTTTGATGATGTCTTTCAGCCCTTTCTTGAACTTAGATGA 903 0.4186 MIQKMENLTRKAIEELVKGREVANQLRSVINEGGNDGSVITTPFAEQLVREVLMSFTNSLLLLSNPSSESVSDVQIRDSSKSEDSQESNCKSSINKERRGCYKRSRRTSQTWEKESGAPIEDGHQWRKYGQKTILNTQYPRNYYRCTHKYDQDCKATKQVQRVQEDPPLFKTTYYGHHTCRTLQNPEMIVDSVSPSDHSTMFLSFDNSLPTPAKQDCPFFSSSSFPSSSSSVKRECKEEEIHPSSSSNDYLLSSELTFDDSTRHVTLSSTLDSDHIGVIPDVLYDSAEFDDVFQPFLELR. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01279 300 SUPERFAMILY WRKY DNA-binding domain 118 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01279 300 MobiDBLite consensus disorder prediction 71 118 - -
Seca1g01279 300 Gene3D WRKY domain 104 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g01279 300 ProSiteProfiles WRKY domain profile. 115 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01279 300 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 215 IPR044810 GO:0003700
Seca1g01279 300 MobiDBLite consensus disorder prediction 76 118 - -
Seca1g01279 300 SMART WRKY_cls 120 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01279 300 Pfam WRKY DNA -binding domain 121 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01279 Seca-Chr1 18690004 18692297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01279 11 264 WRKY Transcription Factor Family AT3G56400 35.714 5.19e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g01279 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01279 - - aprc:113861812 393.66