Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01278 ATGAGTTCTGATCAGCCACTACTTTTGGAATCAGATCTTCCTTCAGTGATTCACCACCGTCATCGGAAATCAGGATCCCGTACGTGTATCTGCAGCAATGCATCCTTCTCCTCCGCTTCCTCCACCTTCGATGAGCCACAACAACCTCAGACCTCCGATTTGGACCTGAACGACCACCGCGACGTCGTTTTAGCCAAGGATTGCATTTTCCACTCTGCATTAGCTAACAGTACCTCTTTCGGCACCGAAAAGGACTTCCACTCAGTCGCGTCCCAATTTTCCGGGCAGTTCCCTTTGGAATGCCCCACGCGGGTGGAGAGAACACGCCGTCAATCGTGGGGTACAATGGAACTGCACGATGCCAATGTCAATAACAATAACCGCACTGTGCCGTTTGAAATATCCTCAGCTTCAGCGGCAGCATCATCTCAGAGGATTCGTCACAAAAGTGTGCAATTTGATGATGAAGCCTTATATGAAGATAGTGCCAGGTTGATCTATATAAATGATCCCAAGAAAACTAATGATAAGTATGAGTTTACTGGGAATGAGATCCGAACTAGTAAATACACCATTATTACCTTCTTGCCTAAGAATCTATTCATTCAGTTCCATAGAGTTGCTTATTTGTATTTCCTTGTTATTGCTGCTCTCAATCAGCTTCCTCCTTTGGCTGTATTTGGGAGGACTGTGTCTCTTTTCCCGTTATTGTTTGTGCTTTGTGTAACGGCTATTAAGGATGGCTATGAGGATTGGAGGAGGCACAGGTCGGATCGCAACGAGAATAATAGAGAGTCTTTGGTGCTTCAGTATGGTGATTTCCGATCGAAGAAATGGAAAAGGATACAAGCTGGTGAGGTTGTTAAGATCTTTGCTGATGAGACTATTCCTGCTGATATGGTGTTGTTGGGGACAAGTGATCAAAGTGGTCTTGCTTATATTCAAACCATGAATTTAGATGGAGAATCGAATTTGAAGACTAGGTATGCTAAGCAGGAAACTGCTTCTGCGGTTTCATCAGAAGCTTGTGATGTTTCTGGGTTTATTAGATGCGAGCAACCCAACAGGAATATTTATGAGTTCACTGCCAATATGGAGTTCAATGGACTTAAGTTTTCGCTTAGCCAGTCAAACATTGTATTGCGTGGTTGCCAACTGAAGAACACAGATTGGATAATTGGGGTTGTGGTTTATGCAGGACAGGAGACAAAAGCAATGATGAACAGTGCACCTTCTCCTTCCAAGAGAAGCAGGCTGGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCGATTTTTCTTTTTATCATGTGTTTGGTTGTGGCCCTTGGGATGGGACTCTGGCTGGTACGCCATAAGAACCAGCTTGATACCTTGCCCTACTACAGGAAAAGATATGTCAACGATGGGCCAGACAAGGGAAAGAAATACAAGTACTATGGGATACCGATGGAAGCGTTTTTCTCCTTTTTAAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGGCAGTCATACTTCATGATTGAAGACAGGGATATGTATGATGCTAACTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTACGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGGATGGCCAGTGTACATGGGAAGAATTATGGGAACTCCTTGCTTATGGCTGGCAATAATACAGCAGAAGCAGCTGTTATTCCTAAACGGAGATGGAAGCTCAAATCTGAAATTGCAGTTGATTCCAAACTGTTGACCATGTTGCAGCAAGACTCAAATAGAGATGAAAGAACTGCTGCTCATGAGTTTTTTCTTACATTGGCTGCATGTAATACTGTGATCCCTATACTTAGTGATGGTGGATATTCTGGTTGTGGAACAAGTGAATCAAATGAAGATGTAGAACACATTGATTACCAGGGAGAGTCTCCTGATGAACAAGCTCTTGTTTCTGCGGCCTCTGCATATGGATATACTCTTTTTGAGCGAACATCTGGACATATTGTTATTGACGTCAATGGTGAGAAACTCAGATTGGACGTATTGGGCCTGCATGAGTTTGATAGCGTACGGAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAATGTTGTAAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGCAAATGGTGGTGAGAGCAACAATAGCATATGGCATTCAACTCAGAGCCATTTAAGTGAATATTCCTCGCAAGGTTTACGCACACTTGTGGTTGCCTCCAGGGATCTTTCAGATGCTGAGCTTGAGGAGTGGCATAACATGTATGAAGAGGCAAGCACTGCATTGACTGACAGAGTTACTAAACTACGTCAAACAGCAGCACTTATAGAATGCAATTTAAAGCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACCGGTGATAAGCAAGAGACGGCAATTTCAATTGGTCTTTCCTGCAAACTTCTTAGTGCAGATATGCAGCAGATTATTATAAATGGCACTTCAGAGGCTGAATGCAAAAATCTTTTGGGTGATGCTATAGCCAAATATTGTGTGAGATCTTCAAGTATAGGGCCTCGAAATCTGAAACACAAAACCAGTGCTGGACATGGTGATCTTGATATTCCCAATGGTTTAAAGTCATTGAACTTGCCCAAGTGGCATCCAGGAAAGGAAGAAGGAACTAATGCTCCATTGGCACTCATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAATTGGAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGTTGTGCTGTCGTGTTGCACCCTTGCAGAAGGCAGGGATTGTTGCTCTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGATGGGGCCAACGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTTATGGCATCAGATTTTGCTATGGGCCAATTTCAGTTCTTGAAAAGATTACTTCTGGTTCATGGACACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTATTGATGTTATTCTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTGACAGATTGGAGTAGTGTATTCTATTCTGTGATATACACGTCTATACCTACTATTATTGTTGGTATTCTGGACAAAGACTTGAGTCATAGGACACTTTTGCAGTATCCAAAACTGTATGGTACTGGTCACAGGCAAGAAGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTCTACGTACCCTTATTCACCTATAAGGACAGTTCAATTGATATATGGAGTATGGGCAGTTTGTGGACAATTGCCGTTGTTATCCTTGTAAATATCCACTTGGCTATGGACATCAACCGATGGGTATTAATTACTCATTGTGCTGTCTGGGGATCAATAATCATCACATATGGTTGTGTGGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTTTTTATCATCTGGCAAGGTCTCCTACATATTGGATAACAATTTTGCTTATAATAATCGTGGGATTGCTCCCTCGCTTCACTTGCAAAGTTGTTTTTCAAATATTTTGGCCTTCAGATATCCAGATAGCTAGAGAAGATGAGTTAATGAGAAAACGACATGATCGTGTGCGCTCAAGGCAACAAGTTCCCAGTTAG 3906 0.4217 MSSDQPLLLESDLPSVIHHRHRKSGSRTCICSNASFSSASSTFDEPQQPQTSDLDLNDHRDVVLAKDCIFHSALANSTSFGTEKDFHSVASQFSGQFPLECPTRVERTRRQSWGTMELHDANVNNNNRTVPFEISSASAAASSQRIRHKSVQFDDEALYEDSARLIYINDPKKTNDKYEFTGNEIRTSKYTIITFLPKNLFIQFHRVAYLYFLVIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQYGDFRSKKWKRIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYAKQETASAVSSEACDVSGFIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMMNSAPSPSKRSRLESYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKNQLDTLPYYRKRYVNDGPDKGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDANSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRMASVHGKNYGNSLLMAGNNTAEAAVIPKRRWKLKSEIAVDSKLLTMLQQDSNRDERTAAHEFFLTLAACNTVIPILSDGGYSGCGTSESNEDVEHIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILANGGESNNSIWHSTQSHLSEYSSQGLRTLVVASRDLSDAELEEWHNMYEEASTALTDRVTKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIIINGTSEAECKNLLGDAIAKYCVRSSSIGPRNLKHKTSAGHGDLDIPNGLKSLNLPKWHPGKEEGTNAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVALIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIIVGILDKDLSHRTLLQYPKLYGTGHRQEAYNMQLFWITMIDTVWQSLVLFYVPLFTYKDSSIDIWSMGSLWTIAVVILVNIHLAMDINRWVLITHCAVWGSIIITYGCVVVLDSIPVFPNYWTFYHLARSPTYWITILLIIIVGLLPRFTCKVVFQIFWPSDIQIAREDELMRKRHDRVRSRQQVPS. 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01278 1301 FunFam Phospholipid-transporting ATPase 822 1047 - -
Seca1g01278 1301 SUPERFAMILY HAD-like 540 1052 IPR036412 -
Seca1g01278 1301 SUPERFAMILY Calcium ATPase, transmembrane domain M 180 1274 IPR023298 -
Seca1g01278 1301 Pfam haloacid dehalogenase-like hydrolase 549 865 - -
Seca1g01278 1301 ProSitePatterns E1-E2 ATPases phosphorylation site. 555 561 IPR018303 -
Seca1g01278 1301 SFLD C1.7: P-type atpase like 537 1058 - -
Seca1g01278 1301 Gene3D - 665 800 IPR023299 GO:0000166
Seca1g01278 1301 Gene3D - 239 409 - -
Seca1g01278 1301 Gene3D - 819 1047 IPR023214 -
Seca1g01278 1301 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 559 836 IPR023299 GO:0000166
Seca1g01278 1301 CDD P-type_ATPase_APLT_Dnf-like 182 1167 - -
Seca1g01278 1301 NCBIfam phospholipid-translocating P-type ATPase 180 1282 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca1g01278 1301 SFLD p-type atpase 537 1058 IPR044492 -
Seca1g01278 1301 Pfam Phospholipid-translocating P-type ATPase C-terminal 1035 1275 IPR032630 -
Seca1g01278 1301 Pfam Phospholipid-translocating ATPase N-terminal 166 231 IPR032631 -
Seca1g01278 1301 Pfam E1-E2 ATPase 265 511 - -
Seca1g01278 1301 FunFam Phospholipid-transporting ATPase 665 800 - -
Seca1g01278 1301 SUPERFAMILY Calcium ATPase, transduction domain A 264 406 IPR008250 -
Seca1g01278 1301 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 150 1285 - -
Seca1g01278 1301 NCBIfam HAD-IC family P-type ATPase 977 1093 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01278 Seca-Chr1 18674047 18683018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01278 143 1284 Primary Pumps ATPases AT5G04930 57.441 0.0 1344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01278 K14802 - gmx:100789830 2162.11