Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01274 ATGACTGAAATCCTCGCTGAAGCTGGCATTGTTCCAGATCCCACCCAGCTTGATGTCAAGCTCTTTAACCGCTGGAGCTTTGACGATGTTCAGGTTAATGACATTTCCCTGGCTGATTATATTGGAGTGGTGGCATCCAAGCATGCCACCTATGTTCCTCACACTGCTGGTAGGTACTCTGTCAAGCGGTTCAGGAAAGCCCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGTAGAAACAATGGCAAAAAACTTATGGCCGTTAGGATCATCAAGCATGCCATGGAAATTATTCATTTGTTGACTGACCAGAACCCTATTCAGGTCATTGTCGATGCTGTCATCAACAGGTGGTCCACGTGA 378 0.4762 MTEILAEAGIVPDPTQLDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINRWST. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01274 125 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Seca1g01274 125 Gene3D Ribosomal protein S7 domain 5 122 IPR036823 -
Seca1g01274 125 PANTHER RIBOSOMAL PROTEIN S7 18 121 IPR000235 GO:0006412
Seca1g01274 125 SUPERFAMILY Ribosomal protein S7 20 121 IPR036823 -
Seca1g01274 125 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 122 IPR000235 GO:0006412
Seca1g01274 125 Pfam Ribosomal protein S7p/S5e 61 121 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01274 Seca-Chr1 18485201 18488340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01274 18 121 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 87.500 2.17e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01274 K02989 - gmx:100305898 218.009