Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01273 ATGGTTTCCTCTCAGTTTTCTGGTTTGACTACGGCTGGCATATATAAACCAGTACAGACTCAGTTACTCTTTCCTGCAAATGCGCCTGATACTGTAAACACGGATCATATTGAGCTGGATTTCTCTGATGTCTTTGGTCCACTTACAGTAGACGTGAATAGCATTGATTCAGCTACTGGTGAGCCAGTAGAAGAAGTGAGTGAGCTGGTTTATGATGACCCGGAAGTCATTTACACCCGCTCACATTCTTTGGTTGGCCCTTCTACTTGTGTTAGTCAATCACTTAAGCTTGGCAAACTCACCATACATGAGACTGAGGATTCTTTGGAACTAGTGGAGTGTGTCAGTGAAGAGGCCATTAAAGACATCGAAGACTCTTCCTTTGACAATGTTATCATTGAGGAATCTTTGAAAGATGAAGGTGGGAATCTCATGAAGATCCAGAGAGTTAGCATTGAAGATTTTGAGGTTTTGAAGGTTGTGGGGCAGGGTGCATTTGCAAAAGTATACCAAGTGAGGAAAAAAGGCACTTCAGAAATATATGCCATGAAGGTTATGCGGAAGGACAGAATTATGGAGAAGAACCATGCTGAATACATGAACGCTGAGAGGAATATTTTGACAAAGATAGAGCACCCCTTTATTGTACAACTCAGATACTCTTTTCAGACAAAATACAGGCTGTATCTTGTGCTGGATTTCGTAAATGGGGGCCATCTCTTCTTTCAGCTTTATCACCAGGGCCTTTTCAGTAGAGAGGATCTAGCACGCATATATGCTGCGGAGATTGTTTCTGCAGTTTCGCATCTCCATTCAAATGGAATAATGCACAGGGATCTAAAACCTGAAAATATCCTACTAGATGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAACAATTTGAAGAAAGTACAAGATCTAATTCAATGTGTGGTACTTTAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTGGGCATCTTACTGTTTGAGATGCTTACTGGAAAGCCACCTTTCTGTGGTGGGAACCGTGATAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTTGAAAGGGCTGCTACAGAAGGAGGCATCCAGGCGCCTAGGAGGTGGACCTAGAGGGATTGAGGAAATTAAAGGCCACAAGTGGTTTAAACCAATCAATTGGAAAAGGTTGGATGCACGTGAAATTCAACCAAGCTTTAGGCCAGAAGTAGCTGGGAAGTACTGTGTTGCCAACTTTGAGAAGCGCTGGACTGATATGCCTGTTGTGGACTCCCCAGCTGCCAGCCCCAATGGTGGAAACCCTTTCAAGGACTTCTCTTATGTGAGGCCTGCAGCCTCTTTTCTTCAAAGGAATAGTCCTGCTTGCTAA 1458 0.4314 MVSSQFSGLTTAGIYKPVQTQLLFPANAPDTVNTDHIELDFSDVFGPLTVDVNSIDSATGEPVEEVSELVYDDPEVIYTRSHSLVGPSTCVSQSLKLGKLTIHETEDSLELVECVSEEAIKDIEDSSFDNVIIEESLKDEGGNLMKIQRVSIEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDRIMEKNHAEYMNAERNILTKIEHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFSREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNRDKIQQKIVKDKIKLPAFLSSEAHSLLKGLLQKEASRRLGGGPRGIEEIKGHKWFKPINWKRLDAREIQPSFRPEVAGKYCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAASFLQRNSPAC. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01273 485 Gene3D Transferase(Phosphotransferase) domain 1 235 431 - -
Seca1g01273 485 CDD STKc_AGC 161 412 IPR045270 GO:0004674|GO:0005524
Seca1g01273 485 Pfam Protein kinase C terminal domain 434 470 IPR017892 GO:0004674|GO:0005524|GO:0006468
Seca1g01273 485 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca1g01273 485 ProSiteProfiles Protein kinase domain profile. 155 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01273 485 Pfam Protein kinase domain 155 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01273 485 FunFam Non-specific serine/threonine protein kinase 235 431 - -
Seca1g01273 485 SMART serkin_6 155 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01273 485 PANTHER RIBOSOMAL PROTEIN S6 KINASE 121 475 - -
Seca1g01273 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Seca1g01273 485 SUPERFAMILY Protein kinase-like (PK-like) 152 472 IPR011009 -
Seca1g01273 485 FunFam Non-specific serine/threonine protein kinase 152 259 - -
Seca1g01273 485 SMART pkinase_C_6 413 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca1g01273 485 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Seca1g01273 485 Gene3D Phosphorylase Kinase; domain 1 152 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01273 Seca-Chr1 18457025 18461779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01273 1 482 AGC Kinase Gene Family AT3G08720 69.342 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Seca1g01273 Pkinase 1.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01273 K04688 - gmx:100804819 868.611