Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01272 ATGGCTTCTCTGCTTCCTACAACTGCAACTACTTCACTTCAACATACTCACACAATCTATTTCTCTGCTCTGAAACCCACCACCCCAAATATTTCTTTCTTATCTAACCGTTTCAAGAGTAATAACTCTTCAAAGTGCAGTGCTTTTTTTGATAACATCCCCAAAGACTTGTTGGATAACACTTTGTATGTGGACCAATTTCCTGTATTCCGATCAGTGTTACTGAAGTTTCAGAGTGTAAGTGAGGACTTATCAGACATTCAGAGATGGGGGTTTGTGATTTTTGCTGCCATGACATGGTTTTACTTAACTGCAAGGCCAGGTGTTCTTGTTGGAGCCATTGATGCATTCCTTTTGGCTCCAATGCAACTGGTTTTGGACAGTTTAGCTGGAAGGAGAAATCTGAAGAGGAAAGATTTTCTGATTGGAGATAAGCTAGGTGAAGGATCATTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGTAGAAGAGAGGATGCAGATGAGTGGAAGAGGCAAGGTGACAAAATTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAAGCAATTCACAGTTCACAAAAGGGGGAAAATGGCTTGTTTGGAAGTTTGAGGTGCTCTGCCTAATATTCGGAAACCGCTCTCTTGCTGATTACATGGCAGATAGGAACTTCCCTTCAAACATAGAGTCTGTCATGTTTGGAAATGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTAATCATCAAGCAGATAATGCGGCAGATCATTACATCTCTTAAGAAAATTCACAACACAGGCATTGTTCACAGGGATGTAAAGCCTGCTAACTTGGTGGTTACCAAATTGGGGCAGATCAAGCTCATTGATTTTGGTTCAGCAACAGACCTGAGGATTGGAAAGAATTATGCTCCCAATTGTAACCCTTTGGATCGTGACTACTGTCCACCTGAACTGTATGTGTTGCCAGAAGAAACATCAAGCCTTCCACCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCTTGCAAATGGCTATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAATTAAGAACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAGGTCTGATTTCCAAATCCTTGATAGTGACTCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTATTTCCAAAAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCTTCTGCTGCTTTGAGGCATCCTTATTTCCTTCTAGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAGTTAAGCTTAAGCACAAATTGA 1527 0.41 MASLLPTTATTSLQHTHTIYFSALKPTTPNISFLSNRFKSNNSSKCSAFFDNIPKDLLDNTLYVDQFPVFRSVLLKFQSVSEDLSDIQRWGFVIFAAMTWFYLTARPGVLVGAIDAFLLAPMQLVLDSLAGRRNLKRKDFLIGDKLGEGSFGVVYSGVLVPKNVDVEERMQMSGRGKVTKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEVLCLIFGNRSLADYMADRNFPSNIESVMFGNVLQGVDSSKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPANLVVTKLGQIKLIDFGSATDLRIGKNYAPNCNPLDRDYCPPELYVLPEETSSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLELRTYGYDLNKWRDSTRMRSDFQILDSDSGRGWDLATKLISKRGSQRRGRLSASAALRHPYFLLGGDQAAAVLSKLSLSTN. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01272 508 Gene3D Phosphorylase Kinase; domain 1 127 250 - -
Seca1g01272 508 ProSiteProfiles Protein kinase domain profile. 140 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01272 508 SUPERFAMILY Protein kinase-like (PK-like) 136 490 IPR011009 -
Seca1g01272 508 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 47 507 - -
Seca1g01272 508 Gene3D Transferase(Phosphotransferase) domain 1 287 491 - -
Seca1g01272 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Seca1g01272 508 SMART serkin_6 140 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01272 508 Pfam Protein kinase domain 296 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01272 Seca-Chr1 18452273 18456401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01272 303 489 AGC Kinase Gene Family AT3G10540 28.497 6.06e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Seca1g01272 Pkinase 1.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01272 - - gmx:100795624 814.683