Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01259 ATGCCACAGTCCTACTTTGCCATTCTACCAATTTTCCTTCTCTTGGTTGTGTTTCATCAAACTTTAGCTGATCTACATTCAGAAAAGCAAGCCCTTCTTGATTTTGCTGCTGCAGTTCATCATGGTAACAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCTTGGGTGGGAGTTACATGTAGTTCTGATGGCTCTCATGTGCTTTCTGTGAGGCTTCCAGGTGTTGGATTGAGAGGTTCTCTCCCACCAAACACAATTGGTAAACTAAATGGTCTCATCAGTCTTAGTCTTAGGTCCAATAGCTTGAATGGGAACCTTCCACCTGACATATTTTCCCTTCCTTCTCTACGCTTTATATATCTACAACACAACAATTTTTCAGGTGATATTCCTGATTTTCTTCCACCACAGCTTATCTTTCTTGATTTGTCCTACAACTCTTTCACAGGACAAATTCCAGGGTTAATCCAAAACTTGACATATCTAATAGGATTGAATCTCCAAAATAACTCTTTGAGAGGACCAATTCCTGATGTTAACCTTCCTAGCCTTAAGAATTTGGATTTGAGCTTCAATTATCTGAATGGTTCAGTTCCTTCAGGTCTTCATAAGTTTCCTGCCTCCTCATTTAAAGGGAATTTGATGTTATGTGGAGAACCTTTGGAACAATGTTCTTCATTTTCTCCTACTACCACTTTGTCTCCACTAATAGTATCCCAGAAACCAAGTGGTCTCTCAAACAAGAAGTTGAGTACAGGGGCAAAAGTTGCTATTGCTTTGGGGGCTTTCACACTGCTGTTTCTTCCAGCTCTTGTGGTAGTGTTTTGCTGTTTCAAGAAAAGGGTAGGTGAACAGAATGTAGCACCTAAAGAGAAGGGTGAGAAGCTTAGGGAAGGCTTTGGGAGTGGGGTGCAAGAACCTGAGAGGAACAAGTTGATATTTTTTGAAGGTTGTTCTCATAATTTTGATCTTGAGGATTTGTTAAGAGCCTCAGCTGAAGTTCTTGGGAAGGGAAGTTGTGGAACAACATATAAAGCTATCTTGGAGGAAGGGACAATAGTGGTAGTGAAGAGGTTAAAAGAAGTGGCCATAGGGAAAAAAGAATTTGAACAGCAAATGGAGATTGTCCAAAGGCTTGATCGCCACCCAAATGTGGTTACCCTTCGTGCTTACTATTATTCCAAGGATGAAAAACTCATGGTTTATGACTACTTCACATCTGGCAGCTTTTCCAAGTTATTGCATGGAACAAAGGAAACTGGACGAACTCCACTAGATTGGGATACTAGATTGAAGATCATGGCAGGAGCTGCTAGGGGCATTGCCCATATCCACTCAGCCAATGGAAGGAAATTTGTCCATGGCAATATAAAATCATCTAATGTGCTTCTCTCAATAGATCTTCAAGGCTGCATATCAGATTTTGGCTTAACTCCTCTAACAAGTTTTTCTGTCTCCTCAAGAAGTCCAGGCTACCGGGCACCTGAGGTTATTGAAACCAGAAAATCCACCCAAAAATCTGATGTATACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAAACACCAATTCAGTATTCAGGGCATGATGATGTGGTTGACCTTCCAAAATGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGATATCCAAACATTGAAGAAGAACTAGTGCAGATGCTGCAACTAGCAATGGCATGTGTAGCAATGACACCTGACACTAGACCTTCCATGGAAGAAGTTGTTAGGATAATTGAAGACATAGCATCCATTTCTTAG 1818 0.4098 MPQSYFAILPIFLLLVVFHQTLADLHSEKQALLDFAAAVHHGNKVNWNSSTSICTSWVGVTCSSDGSHVLSVRLPGVGLRGSLPPNTIGKLNGLISLSLRSNSLNGNLPPDIFSLPSLRFIYLQHNNFSGDIPDFLPPQLIFLDLSYNSFTGQIPGLIQNLTYLIGLNLQNNSLRGPIPDVNLPSLKNLDLSFNYLNGSVPSGLHKFPASSFKGNLMLCGEPLEQCSSFSPTTTLSPLIVSQKPSGLSNKKLSTGAKVAIALGAFTLLFLPALVVVFCCFKKRVGEQNVAPKEKGEKLREGFGSGVQEPERNKLIFFEGCSHNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTIVVVKRLKEVAIGKKEFEQQMEIVQRLDRHPNVVTLRAYYYSKDEKLMVYDYFTSGSFSKLLHGTKETGRTPLDWDTRLKIMAGAARGIAHIHSANGRKFVHGNIKSSNVLLSIDLQGCISDFGLTPLTSFSVSSRSPGYRAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPIQYSGHDDVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLAMACVAMTPDTRPSMEEVVRIIEDIASIS. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01259 605 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01259 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 407 605 - -
Seca1g01259 605 Gene3D Ribonuclease Inhibitor 26 137 IPR032675 -
Seca1g01259 605 Gene3D Ribonuclease Inhibitor 138 228 IPR032675 -
Seca1g01259 605 CDD STKc_IRAK 337 601 - -
Seca1g01259 605 FunFam Leucine-rich repeat receptor-like protein kinase 27 137 - -
Seca1g01259 605 Gene3D Phosphorylase Kinase; domain 1 300 406 - -
Seca1g01259 605 FunFam pollen receptor-like kinase 1 300 406 - -
Seca1g01259 605 SUPERFAMILY L domain-like 39 211 - -
Seca1g01259 605 SUPERFAMILY Protein kinase-like (PK-like) 335 597 IPR011009 -
Seca1g01259 605 Pfam Protein kinase domain 334 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01259 605 PANTHER OS05G0588300 PROTEIN 11 601 - -
Seca1g01259 605 FunFam Leucine-rich repeat receptor-like protein kinase 138 226 - -
Seca1g01259 605 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Seca1g01259 605 Gene3D Transferase(Phosphotransferase) domain 1 408 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01259 Seca-Chr1 18198910 18201570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01259 11 601 Receptor kinase-like Gene Family AT5G58300 61.102 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g01259 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01259 - - gmx:100810832 1015.37