Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01246 ATGTTCTTCAAAAGAAAAAAAAGTCGGCATTTTGAGCCTAGCCCAGAAAATCAAACCCAAGATTCAACTTGGGTAGCCCAGTTTGAGAAGCAAAAGGGAAGAGTGACAAAAAAAAATGTGGTGAGCGAGGGAGACACACATACATACATACATCATACATGCATCATCATCATCAGTCATCGAGTATCTTCTAAGTGTTGGGTTGGGTGGACAAGACACAAAGCATCTCACATTCTCAATATGCTAACCCTCAATCTCAATGCTGTTTCTTCTTCGTTTTCTTCGTTCTCAGTTCTCCCCTTCCCCTCCAATTATCCACTGTCTACTCAAACTCACTCATTAGTTCCTTCCAATCTTAATTACTCCTTTGCTACTACTGGAACCAGAAAGTTCAAGACTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGGCGAAGAGTAACACAACGCAGGTCATCGATCCACAGTCCACAGATGAAGAAGATGAAGAACCTCTGCCTCAAGAGTTTGTCCTTGTTGAAAAGACTGAACTTGATGGAACAATTGAGCAAATAATATTCTCTTCTGGTGGAGATATTGATGTTTATGATCTTCAAGCCCTCTGTGACAAGGTAGGGTGGCCGCGTAGGCCTTTGTCAAAATTAGCTGCTGCTTTGAAAAATAGCTATATAGTGGCCTCACTGCATTCTGTAAGAAAGTCACCTGGGTCAGAGGGGAATGAACAAAAGAAATTAATTGGCATGGCCCGTGCTACGTCAGACCATGCCTTCAATGCTACAATTTGGGATGTGCTCGTTGACCCTGGCTACCAGGGCCAAGGTCTTGGCAAAGCTCTTGTAGAGAAACTGATTCGAACTCTTTTGCAAAGGGACATTGGTAATATAACTTTGTTTGCAGATAGTAAAGGTATAACAATATTGACAACATTTATGCATTTGATGTTCATTTTTTCAATTACATAA 975 0.4113 MFFKRKKSRHFEPSPENQTQDSTWVAQFEKQKGRVTKKNVVSEGDTHTYIHHTCIIIISHRVSSKCWVGWTRHKASHILNMLTLNLNAVSSSFSSFSVLPFPSNYPLSTQTHSLVPSNLNYSFATTGTRKFKTFQLKAGFWESIKSGLAKSNTTQVIDPQSTDEEDEEPLPQEFVLVEKTELDGTIEQIIFSSGGDIDVYDLQALCDKVGWPRRPLSKLAAALKNSYIVASLHSVRKSPGSEGNEQKKLIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALVEKLIRTLLQRDIGNITLFADSKGITILTTFMHLMFIFSIT. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01246 324 CDD NAT_SF 245 301 - -
Seca1g01246 324 Pfam Acetyltransferase (GNAT) family 199 301 IPR000182 GO:0016747
Seca1g01246 324 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g01246 324 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 198 306 IPR016181 -
Seca1g01246 324 Gene3D - 193 311 - -
Seca1g01246 324 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 189 324 IPR000182 GO:0016747
Seca1g01246 324 PANTHER ACYL-COA N-ACYLTRANSFERASE 89 307 IPR045039 GO:0008080
Seca1g01246 324 FunFam Putative acetyltransferase NSI 193 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01246 Seca-Chr1 17908287 17912844 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca1g01246 Acetyltransf_1 9.5e-12 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01246 K22450 - gmx:100799333 382.489