Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01243 ATGCCTGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTTTTATCATCGTCATAGCAGCTTCACAACGAACAGATCCTTCTGAAGTGAAAGCGCTGATGGACATCAGAAAGAGTTTGATTGATCCCATGGACCACCTGAAGAACTGGAATAAGGGTGATCCATGTGCAGCGAATTGGACTGGGGTTTTGTGTTTTGATAGGAAGGAGGCTGATGGTTACTTCCATATCCGTGAGCTCTACCTAATGACTCGGAATCTCTCCGGAAGTCTAGCATCTCAGCTTGGTCAGCTCTCATATCTTGAGATACTGAATTTCATGTGGAACAATCTGACAGGCACAATACCGAAGGAGATTGGAAATATTACATCATTGAAACTCTTGCTTCTGAGTGGGAATAAATTATCTGGGAGTTTACCAGATGAGCTTGGCAACCTCTCAAAATTGAATAGATTCCAAGTTGATGAAAACCAATTATCAGGTCCTGTACCAGAATCATTTTCCAACTTGATCAATGTTAAACACCTCCACATGAACAACAACTCATTCAGTGGTCAAATTCCATCCCAACTTTCAAACCTATCCAGTCTTCTGCATTTGCTTCTGGATAACAATAACTTATCTGGCTCTCTTCCACCAGAATTCTCCATGTTACAAAGTTTGGCCATACTCCAACTTGATAACAATAATTTCAGCAGGAATGGAATTCCTTCTACCTATGCAAACTTATCCAACTTAGTAAAACTGAGTCTAAGAAACTGCAGTCTGCAAGGAGCTGTTCCTGATTTCAGTCCAATACCCAAACTAAGCTATTTAGATCTTAGCTGGAATCAGTTTACTGGACCCATACCATCAAAGAAACTTGCAGACAATATGACAACCATTGATCTGTCCAATAATCATCTCAATGGATCTATTCCTCGAAGCTTTTATCCTCATCTCCAAAAATTGGCACTTGAGAACAATTTACTGTCTGGCTCCGTCCCTGCTAGCATATGGCAGAATTTGTCCTTCAGTAGGAGTGCTAAACTTACAATTGATCTTCATAACAACCTACTTTCGGACGTTTTGGGAAATTTGAACCCCCCAGCAAATGTTACCTTGAGGCTTTCTGGCAATCCTATTTGCAAGAATTCTAACAAACAAAGTATTGGTCAATATTGTGGACTTGAAGGAGATGAAGTGGACAAGGACTCAACAAATTCAAAAATTGTTTGTCAAGTTCAATCTTGTCCAGTGGATAATTTCTATGAATATTCCCCCTCTTCTCCAATTCCTTGTTTTTGTGCAGCACCTCTGAGAATTGGATACAGGCTAAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTTTAGAACTAGTTTTGAATCATACATAACGGAGTACTTAGACTTACACCATTATCAGTTATCAATAGATTCATATGATTGGGAAGAGGGACCTCGTCTTAGAATGTACCTAAAAATTTTTCCATCATACAATGATTCCCACTCCAATACATTCAATGCAAGTGAGGTTCGTCGTATTAAAGGCATATTTACATCATGGCACTTTCCTCGCACTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTGGGACCTTATGCAAATTTAAATATTGATTCAGAGAAGAGAAAAACAAGTACAGGCATAATAGTTGCTATCATAATAGCAGCTGTTGCCTGTGTTTTTGCAATAGCTGCAACAACCATTCTCCTAATTTCTAGAAGAGATGTTAAATACCGGCACTTGATTTCCAGGAAACGTATGTCCTCTAATATACCTATCAAAATAGATGGCTTGAAAGCATTTACTTTTAAAGAGTTGGTTCATGCTACCAACAAATTTGATATCTCAACTAAAGTGGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATGTGATGAAGCATTTGTTGCCATTAAGCGAGCAGAAGAAAATTCATTACAGGGCCAAAAAGAGTTTTTGACTGAGATTGAGCTTTTATCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGCTACTGTAATGAAGAAGGGGAGCAGATGCTGGTTTATGAGTTCATGCCCAATGGCACCCTAAGGGATTGGATTTCTGGTAAAAGAACAAAAACCAAGGAAGGCCTAAGTTGTGGTATGAGAATGCGGATTGCAATGGGTGCAGCGAAAGGCATACTATATCTGCATACAGAGGCTGACCCTCCTATATTCCACCGAGACATTAAAGCCAGTAACATACTTCTGGACTCCAAGTTTACAGCTAAGGTGGCTGATTTTGGATTGTCACGACTTGTACCGTACTTAGATGAAGAAGGAAGTACTCCTAAATATGTGTCAACAGTTGTGAAGGGAACGCCAGGTTACCTGGACCCAGAATATATGATGACTCATAAGTTGACTGATAAAAGTGATGTATATAGCTTAGGAATTGTGTTTCTGGAGCTTTTGACAGGCATGCAACCAATATCACGTGGAAAAAACATTGTCCGCGAGGTTAATGTGGCTTATCAGTCTGGCATAATATACTCCATTATAGACAACAGAATGGGTGTGTATCCATCTGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGTTGTTGCCAAGACCATCCAGAGGAGAGACCATCAATGCAAGATGTGGTAAGGGAACTAGAAGATATTATTGCAATGTTACCTGAAACTGAAACTAGTTTCTTAGATGTTACCTCAGATAATTCTGGTAACATGGCACCCTCATCATCATCACCATCAACAATAACAACAACAACATCAGGATCCAATGTGACAAGGAAGGACCAGCACATGTCCTCATATGTTTCAGGAAGTGATCTTGTTAGTGATGTCATTCCCACCATTGTTCCTCGCTAA 2892 0.3973 MPALRIHGYALAVSFCFIIVIAASQRTDPSEVKALMDIRKSLIDPMDHLKNWNKGDPCAANWTGVLCFDRKEADGYFHIRELYLMTRNLSGSLASQLGQLSYLEILNFMWNNLTGTIPKEIGNITSLKLLLLSGNKLSGSLPDELGNLSKLNRFQVDENQLSGPVPESFSNLINVKHLHMNNNSFSGQIPSQLSNLSSLLHLLLDNNNLSGSLPPEFSMLQSLAILQLDNNNFSRNGIPSTYANLSNLVKLSLRNCSLQGAVPDFSPIPKLSYLDLSWNQFTGPIPSKKLADNMTTIDLSNNHLNGSIPRSFYPHLQKLALENNLLSGSVPASIWQNLSFSRSAKLTIDLHNNLLSDVLGNLNPPANVTLRLSGNPICKNSNKQSIGQYCGLEGDEVDKDSTNSKIVCQVQSCPVDNFYEYSPSSPIPCFCAAPLRIGYRLKSPSFSYFPPFRTSFESYITEYLDLHHYQLSIDSYDWEEGPRLRMYLKIFPSYNDSHSNTFNASEVRRIKGIFTSWHFPRTDFFGPYELLNFTLLGPYANLNIDSEKRKTSTGIIVAIIIAAVACVFAIAATTILLISRRDVKYRHLISRKRMSSNIPIKIDGLKAFTFKELVHATNKFDISTKVGQGGYGNVYKGILCDEAFVAIKRAEENSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGKRTKTKEGLSCGMRMRIAMGAAKGILYLHTEADPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPYLDEEGSTPKYVSTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVFLELLTGMQPISRGKNIVREVNVAYQSGIIYSIIDNRMGVYPSDCLDKFLTLALSCCQDHPEERPSMQDVVRELEDIIAMLPETETSFLDVTSDNSGNMAPSSSSPSTITTTTSGSNVTRKDQHMSSYVSGSDLVSDVIPTIVPR. 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01243 963 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Seca1g01243 963 Pfam Protein kinase domain 622 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01243 963 Gene3D Phosphorylase Kinase; domain 1 591 695 - -
Seca1g01243 963 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Seca1g01243 963 ProSiteProfiles Protein kinase domain profile. 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01243 963 MobiDBLite consensus disorder prediction 912 947 - -
Seca1g01243 963 SUPERFAMILY L domain-like 44 383 - -
Seca1g01243 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Seca1g01243 963 Gene3D Ribonuclease Inhibitor 189 291 IPR032675 -
Seca1g01243 963 PANTHER RECEPTOR-LIKE PROTEIN 55 43 895 - -
Seca1g01243 963 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Seca1g01243 963 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Seca1g01243 963 SMART serkin_6 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01243 963 SUPERFAMILY Protein kinase-like (PK-like) 605 926 IPR011009 -
Seca1g01243 963 Gene3D Transferase(Phosphotransferase) domain 1 696 910 - -
Seca1g01243 963 Gene3D Ribonuclease Inhibitor 292 401 IPR032675 -
Seca1g01243 963 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Seca1g01243 963 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 908 - -
Seca1g01243 963 CDD STKc_IRAK 626 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01243 Seca-Chr1 17826766 17837683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01243 5 904 Receptor kinase-like Gene Family AT5G01950 61.547 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca1g01243 Pkinase 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01243 - - gmx:100815005 1500.72