Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01227 ATGGAAGGGAGTGCGGACCTGTTCAGAGGTTCTCCTGTAGCAGGAGCATCGTCATCGTCAACGTCGTCGTTATCGTCGTCTTCTTCTTCTTCTCCGAATTCGAGAAGATACGGTTTCCTATCGGCGTCTAATATCATTCAGGCGCCGTTATCGGTGCTTCTAGAATATTCTGGTATTCTTCCGGCGAGGTCCAACCAGCACCAACCTAGCCCTGACGCAGTCTCCAACGACGGCGAGGTTTCGATAAGGATCATCGGTTCTGCGGAACACGATCATCATCACAGGGAAGAAGAGTCTTCTCCTGGTGGTGGTTTGGTGGTAGGGAATGATGCTGCTACGATGGCCAATTCCCCTACGCAGGGTGATGCAGACGGCGTTTCAAGGACGGGAAATGGAAATGGTGACGCTGAAGCTGGTGGTGGTGATGGAGCTGGGCCCAATGGGAGGGATTCTTCTTACCAGAGATATGATATTCAGCATGCTGCTAGGTGGATTGAGCAGGTCTTGCCCTTTTCTTTGCTACTCTTGGTGGTCTTCATCCGGCAGCATTTGCAAGGGTTTTTTGTTACAATTTGGATTGCTGCTGTCCTTTTCAAATCAAATGACATTCTGCGGAAACAAACGGCCCTGAAGGGAGAGAGGAAGATACCTGTTCTAATTGGGATTGCTGTTGCTTTCACACTTCACGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTAATGTATCCATTGGTCATGCTTCCTCCCAAAGATATTCCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTTCGCCAGGCTGCAATGGTTTTCAAGTGTATATTGTTAATATATTACAAGAACAGCAGAGGCCGAAATTATCGTAAGCAGGGCCAAATGCTGACTCTAGTTGAATATCTGCTTCTGCTTTACCGAGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACATCTGTTGTTGAAAAGGTGCAATCATTCTTTGCTGCAGTGAAGGCATTATCACGCAAAGAAGTGCATTATGGGGCTTATGCAACATCAGAGCAGGTACTGTGGATGCCTGCTTTTGATCATTGA 1164 0.4613 MEGSADLFRGSPVAGASSSSTSSLSSSSSSSPNSRRYGFLSASNIIQAPLSVLLEYSGILPARSNQHQPSPDAVSNDGEVSIRIIGSAEHDHHHREEESSPGGGLVVGNDAATMANSPTQGDADGVSRTGNGNGDAEAGGGDGAGPNGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGIAVAFTLHVVGVYWWYQNDDLMYPLVMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLIYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVLWMPAFDH. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01227 387 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 26 379 IPR044235 GO:0061630|GO:1904294
Seca1g01227 387 MobiDBLite consensus disorder prediction 1 37 - -
Seca1g01227 387 MobiDBLite consensus disorder prediction 89 152 - -
Seca1g01227 387 MobiDBLite consensus disorder prediction 112 127 - -
Seca1g01227 387 MobiDBLite consensus disorder prediction 13 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01227 Seca-Chr1 17637233 17643490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01227 3 379 C3H Transcription Factor Family AT5G01960 66.146 4.64e-176 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01227 - K22379 gmx:100818546 528.094