Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01224 ATGGATGAAAATTCTGAGAATATCTCGTGTGTGTCGTCTCAGTCTACTTCACAGGTTCATGGGGGCACTGATTCTGGCCAGGTTGCAGTGTGTTCTCTTTGCCAAAAGGCCCTATCTCCTGATAATGAGATGACAAGTGATCTTGCTACCAGTGGCATATGTGGTGATTGTAAATTTTTATTGCTTGAAGATTTTGGGAATCATATGGTTACCCCAAGCTCTCAAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCAGTTGAGAGCATTTTATCACAACAGCTCCCTCATATGGTTAATACTGTGAGACAAAACCAATCCATTGCATCTGCGGAGGATGATCAACTCTTAGATGATGACACTCCTGCTAGGTCGTTGCAGTATGCTAGTACACATACTACCCCTAGTGGGTCTAGACGATGGAGGCAGGTTCTCTCTGATACTGACAGTGATGGTTTTGATAACTGGAGTTGTCTTTATGGTGAAAATGAATCAAGTGCGAGTTTTAGACGATATAGGGTTCCCCATGGTGAGACTGATTCTTTTTCTTTTAGTGCTTATGGAGGTGACTCTGATATCTCTATGGATAGACATAGTTTTGTAGGCAATGGAATGTTTGATTTACCAGATGAGGGATATGAGTTTGATAGTGACACTGACATCGATCCAATGCATGCTGGCCTCAGCCAATGGAACTCAGATGACATGGAAGACGAGGAGGAAGAAGAGGATGAGGAAGAGGACGATGAGGAGGAGGAGGATGAGGATGAGGAAAATGAGGAGGAGGAAGAAAGGGGATGGGAAGTAGCTGAGGCCGATGAAGCTGAAGCCACAGCTCGCCTTCGAATTCTTTTAACCTCAAGTCCAAGTGAGAGCAGGGGTGGCGTTAATTGGGAGCAAAGGTTTAATTCTACTGAACCTGAAGGAATATTTAGCCAGATAATCAGGGATACCTGGCAAGCTTTGGAGGATGCTGATTTACATCATGGAGCAAACTTTGGGGATTATCTTGATATTAGACCCTTTGAAGATCTGCTTGAGCATCTTGCTGAAAATGACATCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCCCGAGTAGTCATTGGCAAGGAACATGAGAAGCATGGCGAATTAGTTTGTGCCATTTGCAAGGATGTCTTGGCCCCTGGCACTGAAGTAAATCAGCTTCCCTGTTCTCACCTTTATCACAACCGTTGCATTTTGCCATGGTTGAGTACACGAAATTCATGCCCACTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAACTACATGTGACGGATGATAATTCCTCTGATGTTTCTGATGAAGCTGAAGTGGGTGAAGAGGATGGTACTACTCAAGGTGGAAGACAACAGAGAGGAGTTCTTAGCAATGGTTCTACCACGAATTCTTCCGCAACAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTTGGCATGGTTCTTGTCCTGTGGTTAGGTAGCAACTCTCAGATTGAAGGGAGTAGACATCTGGGTGGTCGCTACTTATCCGGGCAAAATCAACATGCAATTCATGCTTATGCCTCCCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1731 0.4443 MDENSENISCVSSQSTSQVHGGTDSGQVAVCSLCQKALSPDNEMTSDLATSGICGDCKFLLLEDFGNHMVTPSSQRRLRGRFRHNSSESVESILSQQLPHMVNTVRQNQSIASAEDDQLLDDDTPARSLQYASTHTTPSGSRRWRQVLSDTDSDGFDNWSCLYGENESSASFRRYRVPHGETDSFSFSAYGGDSDISMDRHSFVGNGMFDLPDEGYEFDSDTDIDPMHAGLSQWNSDDMEDEEEEEDEEEDDEEEEDEDEENEEEEERGWEVAEADEAEATARLRILLTSSPSESRGGVNWEQRFNSTEPEGIFSQIIRDTWQALEDADLHHGANFGDYLDIRPFEDLLEHLAENDISRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLAPGTEVNQLPCSHLYHNRCILPWLSTRNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQLHVTDDNSSDVSDEAEVGEEDGTTQGGRQQRGVLSNGSTTNSSATRGGRGRWFFLAAAPIVSLVGMVLVLWLGSNSQIEGSRHLGGRYLSGQNQHAIHAYASQNQRESRSRRWWCPF. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01224 576 SMART ring_2 390 430 IPR001841 -
Seca1g01224 576 MobiDBLite consensus disorder prediction 236 273 - -
Seca1g01224 576 MobiDBLite consensus disorder prediction 457 504 - -
Seca1g01224 576 FunFam E3 ubiquitin-protein ligase RING1-like 351 437 - -
Seca1g01224 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 437 IPR013083 -
Seca1g01224 576 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 243 435 - -
Seca1g01224 576 Pfam Ring finger domain 390 431 IPR001841 -
Seca1g01224 576 CDD RING-H2_PA-TM-RING 389 431 - -
Seca1g01224 576 MobiDBLite consensus disorder prediction 214 276 - -
Seca1g01224 576 SUPERFAMILY RING/U-box 373 437 - -
Seca1g01224 576 ProSiteProfiles Zinc finger RING-type profile. 390 431 IPR001841 -
Seca1g01224 576 MobiDBLite consensus disorder prediction 482 504 - -
Seca1g01224 576 MobiDBLite consensus disorder prediction 1 23 - -
Seca1g01224 576 Coils Coil 236 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01224 Seca-Chr1 17615958 17618858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01224 29 576 C3H Transcription Factor Family AT5G01980 44.092 1.64e-123 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01224 - - gmx:100797923 873.618