Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01205 ATGGCTGCTTGTGCTTTGTTCAGTGCCAATAGTCCTCAAGATGGCAATGTTAATGGAGGAAGTGCTAATAGTGCTAGTCCTTTGACAAGTGCATCTAACTCAAGCAACAATATGAGCAGTGAAGAACACACCTTACAAGGCATGCCACTTCCACAGCCTCATTGTGAAAGAAAAATGGTCAGAAAAAGAATGGCTTCTGAGATGGCTACCACAACACCACACCACAACAACAACAACTCTTCTTCTTGTTCTTCCACTCCTAGGTTTCCAAGAAGAACCAACACCAACATGTCCTCCTTGAATTGCAGTTTACCACCCACAGAAAAAGGAACCACCACCACAACAACAACAACATTAGCCGCAGGTACTTGTAATAACTATCATTATAATAATAGTAACACCACCACAAATACTACTACTAATAATAATAATATTAGTCATTGTAATCCTTTGTCAAGAGATAACGTTGCTATTCTTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGCTTCTACCTTCTTCTTCTTCCTCCTCTGCCTCTTTACCCTCTTCAAACTACACTCATTTTCAACCAATTCTTGAGACACAAAACCAAGAACAGAACCCTTTACCTGCTGTTTGTGGATTCTCTGGTTTACCACTTTTCCCATCTCAAACCCAAAGAAGCCACAGAGATAATAACAGCAACAATATCAGAAACAGTAGTAGCAGTGTTGTTGTTGATGTGGTTGCTTCTTCTTCTTCTCCTTCAATGGATGATACTTCAGCAACAACTAATTGGATCGATGGGATATTGAAGGATCTTATTCACAGTTCCAACAGTGTTTCTATTCCTCAACTTATTAGCAACGTGAGGGAGATAATATACCCTTGTAATCCCAATCTTGCAGTGGTTCTTGAACATAGGTTGAGACTTCTTACAGAGTCATCCACACCATCAAACTCTTCTGTTACAGAGAGAAAAAGAACCACAGAAGGGGTTGTTCCACCTCCTCCTCCTCCTCCTCTTACTCCTAATGTTTCTTCTATGAAACTCATGGGTCGTGTAGATGGCATTGTTCCCACTTTACATTTCCCTGATTCTTCACCTGTTGTGAATCAAAACATGTTTTCCAATTGGGGTATGCCTCAAATCACCACCCTTCACCATCAAGAAAGTGTCAACAACACCAACATCAACACCAATAACAACAACAACAACCCTTCTGTTTCTTTGGTTGCTTTACCTTCACCATCTACACACCAGGGCTATTCACCAACACAAGAAAAGCAGCAGCAACAACAACATCAGCCTCAGCAAGAGGAAGATCTTGCAGCAACAACAAGCAGTGCTGCTGAGATGGTTGTGTTAACTAGAAAGAAGAAAGAGGAGTTAAGAGAACAGAAGAAGAAAGATGAAGAGGGTTTACACCTTCTCACCTTGTTGCTTCAGTGTGCAGAAGCTGTATCAGCTGAGAATCTAGAAGATGCCAACAAGATGTTGCTTGAAATTTCCCAACTTTCTACACCATTTGGTACATCAGCACAGCGTGTTGCAGCATATTTCTCAGAAGCCATATCAGCAAGACTAGTTAGTTCATGTTTGGGAATATATGCATCTCTTCCTCACACCCACCAAAGCCATAAGGTAGCATCAGCTTTCCAAGTCTTCAATGGAATCAGCCCTTTTGTAAAGTTCTCACATTTCACAGCAAACCAAGCTATACAAGAAGCTTTTGATAGAGAAGAGAGGGTGCATATCATAGATCTAGACATAATGCAGGGTTTGCAATGGCCTGGTTTATTTCATATCCTTGCTTCAAGACCTGGTGGACCCCCTTATGTGAGACTCACAGGGTTAGGTACTTCCATGGAAGCACTTGAAGCAACTGGTAAACGTTTGTCTGATTTTGCTAGTAAACTTGGACTTCCCTTTGAGTTCTTCCCAGTTGCTGATAAAGTTGGGAACCTTGACCCTGAGAGGCTTAATGTGAGCAAAGCTGAAGCTGTTGCTGTTCATTGGTTGCAACATTCACTCTATGATGTCACTGGATCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTGAGCAACGCTGGTTCTTTCTTAGGAAGGTTTGTGGAAGCCATACACTATTACTCAGCATTATTTGATTCTCTTGGTTCTAGCTATGGAGAGGAAAGTGAAGAGAGACATGTGGTGGAGCAGCAGCTACTATCTAGGGAGATTCGTAATGTGCTAGCAGTTGGGGGCCCATCAAGAACTGGAGAGATCAAGTTCCATAACTGGAGAGAAAAGCTTCAACAGTGTGGGTTTAGAGGTATTTCACTAGCTGGTAATGCTGCCACACAAGCAAGTTTACTCCTTGGCATGTTCCCTTCTGAAGGGTATACCTTAGTGGAGGACAATGGGATCCTTAAACTTGGTTGGAAAGATCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCCTACCATTGTAGCACTGCCATTACTCATCATAACTAA 2538 0.4232 MAACALFSANSPQDGNVNGGSANSASPLTSASNSSNNMSSEEHTLQGMPLPQPHCERKMVRKRMASEMATTTPHHNNNNSSSCSSTPRFPRRTNTNMSSLNCSLPPTEKGTTTTTTTTLAAGTCNNYHYNNSNTTTNTTTNNNNISHCNPLSRDNVAILPNYPTVTVTTNYSTMLLPSSSSSSASLPSSNYTHFQPILETQNQEQNPLPAVCGFSGLPLFPSQTQRSHRDNNSNNIRNSSSSVVVDVVASSSSPSMDDTSATTNWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAVVLEHRLRLLTESSTPSNSSVTERKRTTEGVVPPPPPPPLTPNVSSMKLMGRVDGIVPTLHFPDSSPVVNQNMFSNWGMPQITTLHHQESVNNTNINTNNNNNNPSVSLVALPSPSTHQGYSPTQEKQQQQQHQPQQEEDLAATTSSAAEMVVLTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYASLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFASKLGLPFEFFPVADKVGNLDPERLNVSKAEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPYHCSTAITHHN. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01205 845 MobiDBLite consensus disorder prediction 64 114 - -
Seca1g01205 845 MobiDBLite consensus disorder prediction 222 241 - -
Seca1g01205 845 MobiDBLite consensus disorder prediction 9 46 - -
Seca1g01205 845 Pfam GRAS domain family 477 832 IPR005202 -
Seca1g01205 845 ProSiteProfiles GRAS family profile. 467 832 IPR005202 -
Seca1g01205 845 MobiDBLite consensus disorder prediction 69 114 - -
Seca1g01205 845 MobiDBLite consensus disorder prediction 6 52 - -
Seca1g01205 845 MobiDBLite consensus disorder prediction 314 345 - -
Seca1g01205 845 MobiDBLite consensus disorder prediction 393 447 - -
Seca1g01205 845 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 429 827 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01205 Seca-Chr1 17259777 17263356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01205 427 833 GRAS Transcription Factor Family AT3G54220 80.288 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca1g01205 GRAS 9.8e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01205 - - gmx:100803919 1097.8