Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01199 ATGAATGTGTCATCAATTCCAATGGCCGAAGATGTAGAGAAATGGGTCAATAATATTCATGGAAATATTATGCAACATGGCCAAGAGAGTGTTGTTGAATATTCACCACAATTGGAAATGGAGTTTGAATCCGAGGTAGCGACCTATGAATTTTATAATGAGTACAGTAGAAGAAATGGGTTTGGTATTCGTAGAGAATATGGAAATAAAAGCAAAAAAGATGGAATCTTGACTTCAAGAAGATTCTCATGCTTCAAAGAGGGTAAACGAGGCATTGACAAACGACACCACTTGACGAAAGAGCCTAGAGCAGAAACCAGAACAGGATGTGAAGCACGTGTGTTTATTTCACTTGATCGAAAGATTGGGAAATACAAGGTTATTGATTTTGTAGCTCAACATAATCACCCTCTTCAACCGCCAGAGTATGTTCATTTGATTCGCTCTCATCGAAACAATCCGAGTCACAAGCATCACAAATTGTATTAG 489 0.3804 MNVSSIPMAEDVEKWVNNIHGNIMQHGQESVVEYSPQLEMEFESEVATYEFYNEYSRRNGFGIRREYGNKSKKDGILTSRRFSCFKEGKRGIDKRHHLTKEPRAETRTGCEARVFISLDRKIGKYKVIDFVAQHNHPLQPPEYVHLIRSHRNNPSHKHHKLY. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01199 162 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g01199 162 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 23 152 - -
Seca1g01199 162 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01199 Seca-Chr1 17224451 17224939 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01199 FAR1 5.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01199 - - psat:127085847 233.417