Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01185 ATGGAAGGGAGAGAAGGTATGAGCTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAACCTATCATGTGGCACCAAGGAGTGAAGCTCCAAGCCAAGGTCCTGTTCCTGAACCAGGAGCTGCAGCTATTGGTGTCTCACCAGTGAGTGTGGGATTGGATGGTTCAGCTGTTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGACCAGATGGGGCTGTCACTATGGCATTGTCACCATTGCCAATCTCATCTTCAGCTCCATTTTCTAATGACTTTTCATCCGGGAAGCGGGGGAAACCGCGAGCGATGGAGTACAAGCAGTCCAAAAAAGTTGGAGTGGATCATCTAGGTGAATCTGTTGGTACAAACTTTATGCCACATATCATTACAGTCAATGCTGGAGAGGACATTACAATGAAGGTTATATCTTTTTCCCAGCAAGGACCCCGAGCTATATGCATCCTATCTGCTAATGGTGTAATTTCAAATGTTACTCTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATTCTTTCATTATCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCTGGTGGGATGAGTGTTTCCTTGTCAAGTCCAGACGGTCGCGTTGTCGGTGGTGGAGTTGCTGGTCTTCTTATAGCTGCCAGTCCTGTGCAGGTGGTAGTGGGAAGTTTTCTTCCAAGCAACCAGCAAGATCAGAAGCCAAAGAAGCCCAAGTCTGATTATGTACCACCAGTTACTATTACCCCAGCCATTGCAGTGTCTTCTGCACCACCCCCAACTAATGGTGAAAAAGAGGATATCATGGGTGGACATCTACTGCAAAATTCAGGAACCCTTAATCCAAACCTTACTTCTCCTCCCCCAGCCTTCAGAAGAGAAAATTGGGTTAACATGCACTCTATGTCAGACACAATGAAGTCTGCAACTGATATCAACATATCTTTGCCTGATAGTTAA 1005 0.4627 MEGREGMSSGVTVIGAEAPSTYHVAPRSEAPSQGPVPEPGAAAIGVSPVSVGLDGSAVKKKRGRPRKYGPDGAVTMALSPLPISSSAPFSNDFSSGKRGKPRAMEYKQSKKVGVDHLGESVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLIAASPVQVVVGSFLPSNQQDQKPKKPKSDYVPPVTITPAIAVSSAPPPTNGEKEDIMGGHLLQNSGTLNPNLTSPPPAFRRENWVNMHSMSDTMKSATDINISLPDS. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01185 334 ProSiteProfiles PPC domain profile profile. 122 264 IPR005175 -
Seca1g01185 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 244 - -
Seca1g01185 334 MobiDBLite consensus disorder prediction 18 47 - -
Seca1g01185 334 CDD DUF296 127 240 IPR005175 -
Seca1g01185 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
Seca1g01185 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 308 IPR039605 GO:0003680
Seca1g01185 334 Gene3D - 127 256 - -
Seca1g01185 334 FunFam AT-hook motif nuclear-localized protein 1-like 127 257 - -
Seca1g01185 334 MobiDBLite consensus disorder prediction 267 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01185 Seca-Chr1 16988953 16994154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01185 6 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.756 1.01e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01185 - - gmx:100777213 521.161