Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01181 ATGAGTGGCAGTGGTAGCGGTAGCGGTGGTGGTGCCGGTGCCGGTGCCGGTGTTGGTACTAGTACCGGTGTCGGTGCTGGTAGCAGTGGTGGTAGTGGTAACAGCAGCGGTAGCCCTTGTGGGGCTTGCAAGTTTTTGAGGAGAAAGTGTGTGCAAGGGTGCATCTTTGCTCCATACTTTGACTCAGAGCAAGGTGCAAGCCACTTTGCAGCTGTTCACAAGGTGTTTGGGGCCAGCAACGTGTCTAAGCTACTCCTCAGCATTCCAGTGAATAGGAGGCTTGATACTGTGATCACCGTTTGCTATGAAGCACAATCAAGGTTGAGAGATCCAGTCTATGGCTGTGTTGGACACATCTTTGCCCTTCAACAACAGGTAGTGATGAGTTTACAAGCAGAACTCTCCTACTTACAAGGTCACCTTAATGCAATGGAGCTACCCCAACCACCACCACCACCTCCTCCACCGCAAGCGCCGATGGCACCACCGTTTTTGTCATTTTCTGACTTACCACCCGCCGCCACCGCAGCTATGCCAATTCCCTATGACTTAGCTACACTTTTTGAGCCAATGGCCCAAACTTCATGGGCCATACAACAAAGGTCCATGGACCAACGTCAGTACCTGTCTGCAGGCCCATCATCAACAACCAGTGGATCTCTTCAAGCAGTGGCGCGTGAGCTTTCAAACAGACATGGGTCTTCATCTACACTTCCCATGCCATCCTCCAATGCTTCATCATCTCTTTCACTTTCTAAGTGA 762 0.5118 MSGSGSGSGGGAGAGAGVGTSTGVGAGSSGGSGNSSGSPCGACKFLRRKCVQGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLLSIPVNRRLDTVITVCYEAQSRLRDPVYGCVGHIFALQQQVVMSLQAELSYLQGHLNAMELPQPPPPPPPPQAPMAPPFLSFSDLPPAATAAMPIPYDLATLFEPMAQTSWAIQQRSMDQRQYLSAGPSSTTSGSLQAVARELSNRHGSSSTLPMPSSNASSSLSLSK. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01181 253 ProSiteProfiles LOB domain profile. 38 141 IPR004883 -
Seca1g01181 253 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 169 - -
Seca1g01181 253 Pfam Lateral organ boundaries (LOB) domain 39 137 IPR004883 -
Seca1g01181 253 MobiDBLite consensus disorder prediction 207 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01181 Seca-Chr1 16839322 16843782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01181 42 234 AS2 family AT2G45420 58.373 5.76e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g01181 LOB 7e-36 No_clan