Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01174 ATGGCTTCGAACCTTCACCGCAATGGCGCCCAAAGAGGAAGCGCCAAGTTCGATCGTCCTCTCAAGCCCCGCCCCCGTCCCTCCTCCCCCTCGCCGGGATCCGCCCTTCGCCGCCCCAACCCCGCCGCTCGCAACGGCGATGCCGGTGAATATTGGGTTGGAAAAGATTTTGGTATTGTGATGGCGAAAAGGCTACAGAACAGTTCATTGTATGAGCAAGTGCCTGGAAGAGTTCGAGTGGCTGTAAGATTGAGACCTCGAAATGCTGAAGAAATGATGGCAGATGCTGATTTTGCTGACTGTGTCGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGTAGAAACAATTGGGATTCCGACACTTATGAGTTCGATGAGGTGCTTACTGAATTTGCATCACAGAAGCGTGTCTATGAAGTTGTGGCTAAGCCGGTTGTGGAGAGTGTTCTTGATGGTTATAATGGGACTGTGATGGCATATGGTCAAACTGGAACGGGGAAAACTTTTACCCTTGGACGACTGGGGGAAGGAGACACCTCTGATCGTGGTATAATGGTTCGTTCCATGGAGGATATTCTTGCTGACTTATCTCCAGATACTGATTCTATCACTGTCTCGTATCTGCAGCTTTACATGGAGACTCTCCAGGACTTGCTTAATCCAGCAAATGATAACATTCCTATTGTGGAAGATCCAAGAACCGGCGATGTATCCATGCCTGGGGCAACGCTTGTAGATATCAGGGACCAACAGAATTTTTTGGAGTTGTTAAGAATAGGGGAAGCTAATCGAGTTGCTGCTAACACAAAATTGAATACTGAATCTTCTCGTAGTCATGCTATTCTGATGGTACATATTAAGAGGTCTGTCATGGAATGTGAAGATATTGTGTCTAGTCAAAATGGTGATGCCTCTCACTTGACTAAACCTTCAAAGCCACTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTAGCAGGTTCAGAGCGTGTCCATAAGTCAGGAAGTGAAGGACACATGCTAGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCACTTGGAAAATGTATCAATGCTCTGGCAGAGAACAATGCTCATGTCCCATTTCGTGATTCAAAGCTTACCAGGATGCTCCGAGATTCTTTTGGTGGAACGGCTAGGACTTCATTGATTGTGACTATTGGCCCGTCTCCACGTCATCGAGGAGAAACTTCTAGTACCATATTGTTTGGCCAAAGGGTCAGGTTTCATATCTTAGTATCTGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAGGAGTTTGATTATAAAAGCTTGTCTCGAAAGCTTGAGGTACAATTAGATAAGCTTATTGCGGAAAATGAAAGGCAACAGAAAGCTTTTGAGGATGAAGTTGAAAAAATAAATTTAGAGGCACAATGTCGTATTGCTGAGGTTGAGAGAAACTTCGCAGATGCACTAGAGAAAGAGAGATTGAAGTGCCAAATGGAGTACATGGAATTGGTAAAGGAGCTGGAGCAGAAGTTGGTGTTAAATCAGGAAAGACATGACCACAATAATTTTGTGGCTGATCATGGAGAGGGGCTGGCACTATCTTCTGCAGATGAAGTTGCTGAGGTCAAAATGCTGCTTGAAACTGAAATCAAGCGCAGAAAGGCAGCTGAAGAAGAGGTAGAACATCTAAAGAATCAGCTAGGGAAATGTACTCAAGCAGAGGCAGGAGGGGATTTGGAGATTATAAAGCTCCACAACATCCTGGAGGATGAAGCTAATCAGAAAAAGAAACTTGAAGAAGAAATAATAATATTAAGAAGTCAATTATTGCAATTAAACTTTGAAGCTGACCAGATGAGAAGGTGTTTAGAAAATGGAAGCTCTGGGAGTACATTTTCTGCCATGGATTCCTCCATGAGGCATTCCCAATTCAAAGACACTGGGAATGGTCAGAAGTCATCCGTTGCTACACTCTTTGAGCAAGTTGGATTGCAAAAGATTTTGTCATTGCTGGAGTCAGATGATGCCAATGTGCGAATTCATGCTGTAAAAGTGGTAGCCAACCTAGCAGCTGAAGAGGCTAATCAAAAGAGAATTGTTGAATCTGGTGGGCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAACCTTGCTATGAATGAAGCGAATCAAGAACTTATAATGGCTGAAGGAGGAATTACTCTGTTATCAATGACTTCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCTGGAGCAATTGCTAACCTATGTGGAAATGATAAAATATTGATGACTCTAAGATCTCAAGGAGGTATCAAGGCTTTACTGGGAATTGTAAGATGTGGGCATCCAGATGTTCTTTCCCAAGTTGCACGAGGAATTGCTAACTTTGCAAAATGCGAGTCTCGGGCTTCTAATCAAGGGATAAAAAGTGGTAGATCTATTTTGATAGAAGATGGTGCACTTCCGTGGATAGTACAAAATGCTAATAATGAAGCTGCACCTATCAGGCGTCACATCGAGCTTGCACTATGCCACTTGGCACAGCATGAAGTGAATGCAAAAGACATGATTAGCGGAGGTGCTCTTTGGGAGCTTGTCAGGATTTCACGGGATTGTTCACGAGAGGACATACGGAGTCTTGCTCGTCGAACTCTCAGTTCTATCCCAACATTCAAATCTGAATTGCGGCGATTACGTATAGATTATTGA 2766 0.4349 MASNLHRNGAQRGSAKFDRPLKPRPRPSSPSPGSALRRPNPAARNGDAGEYWVGKDFGIVMAKRLQNSSLYEQVPGRVRVAVRLRPRNAEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGEGDTSDRGIMVRSMEDILADLSPDTDSITVSYLQLYMETLQDLLNPANDNIPIVEDPRTGDVSMPGATLVDIRDQQNFLELLRIGEANRVAANTKLNTESSRSHAILMVHIKRSVMECEDIVSSQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRVRFHILVSAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDEVEKINLEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEQKLVLNQERHDHNNFVADHGEGLALSSADEVAEVKMLLETEIKRRKAAEEEVEHLKNQLGKCTQAEAGGDLEIIKLHNILEDEANQKKKLEEEIIILRSQLLQLNFEADQMRRCLENGSSGSTFSAMDSSMRHSQFKDTGNGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVESGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTSSDAEDPQTLRMVAGAIANLCGNDKILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSILIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRSLARRTLSSIPTFKSELRRLRIDY. 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01174 921 PANTHER CENTROMERE PROTEIN E 77 637 IPR027640 GO:0003777|GO:0007018
Seca1g01174 921 Gene3D Kinesin motor domain 70 458 IPR036961 -
Seca1g01174 921 MobiDBLite consensus disorder prediction 1 47 - -
Seca1g01174 921 Pfam Kinesin motor domain 83 417 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01174 921 Gene3D - 753 918 IPR011989 -
Seca1g01174 921 ProSiteProfiles Kinesin motor domain profile. 77 419 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01174 921 CDD KISc 77 417 - -
Seca1g01174 921 SMART arm_5 653 692 IPR000225 GO:0005515
Seca1g01174 921 SMART arm_5 693 734 IPR000225 GO:0005515
Seca1g01174 921 SMART arm_5 735 776 IPR000225 GO:0005515
Seca1g01174 921 SMART arm_5 777 817 IPR000225 GO:0005515
Seca1g01174 921 FunFam Kinesin-like protein 633 909 - -
Seca1g01174 921 PRINTS Kinesin heavy chain signature 153 174 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01174 921 PRINTS Kinesin heavy chain signature 369 390 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01174 921 PRINTS Kinesin heavy chain signature 320 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01174 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 704 747 IPR000225 GO:0005515
Seca1g01174 921 FunFam Kinesin-like protein 70 457 - -
Seca1g01174 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 426 IPR027417 -
Seca1g01174 921 Coils Coil 540 574 - -
Seca1g01174 921 SUPERFAMILY ARM repeat 657 908 IPR016024 -
Seca1g01174 921 SMART kinesin_4 75 425 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca1g01174 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 663 705 IPR000225 GO:0005515
Seca1g01174 921 ProSitePatterns Kinesin motor domain signature. 319 330 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca1g01174 921 Pfam Armadillo/beta-catenin-like repeat 696 733 IPR000225 GO:0005515
Seca1g01174 921 Coils Coil 443 507 - -
Seca1g01174 921 Coils Coil 582 616 - -
Seca1g01174 921 Gene3D - 648 752 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01174 Seca-Chr1 16753431 16766703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01174 60 417 Calmodulin-binding Proteins AT5G65930 35.733 4.65e-48 184