Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01165 ATGGCGACTAATCTTCTTGCAACTGGTTCGACTACTACGCCGTCCTCTCAGGAGAAACGACACCGTTCGATCTTCGAAGTTCAACCAGACTTCTTCAATTCTTGTCGCCTTCTCCATTCTCCCCACTCGTCCGTTTCCGAGCGTCACCACCACGCAGGCATCGAAACCCTTGAACCACCGTCAAACGACGTCGTTGCCGTTGATGATACTCAAAACGGAGTTTCGGTGCCTAGGTGGACCTGCAACACCTGCAAGGCTCAATTCGATTCCCTTCAAGACCAGCGTTCTCATTTCAAATCCGACATTCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGATTTTGTCAGAGACTATGATGTGTCAAGCATATCTGGATCAGAAAGTGATGATGACAGTGAAACTGAGTCTCAAAGTCAAAATGAAGTGCGTGATAAATCAAATCTAAGTTTTAAACAAAAGCTATTCATCGGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGTTTGATTATGGATGTGAATGAAAATGTATTGTATGGGAATGAAAAAGTGGAGAATGAAGTGGTTGAGAGGTTGAAATCTCTGACTATTGAGCCAAGGGATAATACCCATTTGAGGATTGTTCTGCTTGCATCTGGTGGGCACTTTGCGGGTTGTGTCTTTGATGGTGATACAGTTGTGGCTCACAAGACATTTCACAGGTATGTTGTAAGGGCCAAGGCAGGAAAAAAACAGTCATCTAAAGATGCTTCTGGCAGATCTATACATTCTGCTGGTGCTTCACTTCGTCGTTATAATGAACTTGCATTAAAAAAGGAAGTTCAAGAACTGCTTACTGCTTGGAAACCTTATTTTGATGCATCCAGATGCATTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAAACCATATTTTACCAATCAGCAGCGTGCTGTTAGAAATATTGCTATGAGCGTTCGTAGGCCTACTTTCCGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCAAGTATACTATGAAGCAGATGAGAAGGAAATTTTACAAAGCAACAAAGAGGACTTGGTTCCTATTCACATTTCTAAAAGAAATGGCAGCCCACCCTCCAGCAAAGGAGACGTGGCTGGGTTGGATGTCGAAGATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATGAACCTATTTCAAGTAATGGAGAAAGTGAGAATGAGCTACCTGCTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTCAAAAGGTTATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATCACAGATGAAAGGGGACGGACCCCATATATGTTGGCACATGACAAGGAAGTCAGGAATGCTTTTAGAAGGTTCATGGCGTCAAATCTTGACAAATGGGATTGGCATGCTGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGCAGGAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTTCCTTGCTTAAGAATGATTCCAAAACTGTAGAAAGGCAATTGACTGCTCCAGTATCTTTTAAGGGAGAATCTCAACCAAAAAGTGGTGTGCAATTATCAAAAGAGGAGGAAATAAGAAGAGAACAGGCTGCAGAAAGAGAAAAGCGAGCAGCTGCCGCTGAGAGAAGAATTGCTGCCCTTAAAATTCAAGTTAATAGTGCAACCACTGCATCTAGCAATTCAGAGCCTAAAAGTGGATTAGCCGGTGACATCTATTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGATGGATGA 1992 0.4237 MATNLLATGSTTTPSSQEKRHRSIFEVQPDFFNSCRLLHSPHSSVSERHHHAGIETLEPPSNDVVAVDDTQNGVSVPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSDFVRDYDVSSISGSESDDDSETESQSQNEVRDKSNLSFKQKLFIGLQTGQRVSVWKCLIMDVNENVLYGNEKVENEVVERLKSLTIEPRDNTHLRIVLLASGGHFAGCVFDGDTVVAHKTFHRYVVRAKAGKKQSSKDASGRSIHSAGASLRRYNELALKKEVQELLTAWKPYFDASRCIFIHAPSSSRQLLYDGEKPYFTNQQRAVRNIAMSVRRPTFREAKRVYSQLTQVYYEADEKEILQSNKEDLVPIHISKRNGSPPSSKGDVAGLDVEDKAEACSSKQNDEPISSNGESENELPAKSTPLHQAAQSGDSQKVMELLEQGLDPCITDERGRTPYMLAHDKEVRNAFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAGKDAKRKARAKELKKLRKAKEKKAQAEASLLKNDSKTVERQLTAPVSFKGESQPKSGVQLSKEEEIRREQAAEREKRAAAAERRIAALKIQVNSATTASSNSEPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDG. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01165 663 ProSiteProfiles Ankyrin repeat profile. 428 460 IPR002110 GO:0005515
Seca1g01165 663 ProSitePatterns Zinc finger C2H2 type domain signature. 81 103 IPR013087 -
Seca1g01165 663 MobiDBLite consensus disorder prediction 410 442 - -
Seca1g01165 663 MobiDBLite consensus disorder prediction 136 159 - -
Seca1g01165 663 Coils Coil 575 611 - -
Seca1g01165 663 MobiDBLite consensus disorder prediction 1 21 - -
Seca1g01165 663 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 662 IPR047139 -
Seca1g01165 663 ProSiteProfiles Ankyrin repeat region circular profile. 428 454 - -
Seca1g01165 663 SUPERFAMILY beta-beta-alpha zinc fingers 64 110 IPR036236 -
Seca1g01165 663 MobiDBLite consensus disorder prediction 403 442 - -
Seca1g01165 663 MobiDBLite consensus disorder prediction 1 18 - -
Seca1g01165 663 Coils Coil 515 554 - -
Seca1g01165 663 Pfam Vms1-associating treble clef domain 626 658 IPR041540 -
Seca1g01165 663 Pfam Bacteroidetes VLRF1 release factor 223 361 IPR041175 -
Seca1g01165 663 SUPERFAMILY Ankyrin repeat 430 482 IPR036770 -
Seca1g01165 663 MobiDBLite consensus disorder prediction 557 583 - -
Seca1g01165 663 Gene3D - 391 491 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01165 Seca-Chr1 16495746 16502145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01165 19 610 C2H2 Transcription Factor Family AT1G01930 55.032 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01165 K26089 - gmx:100527709 966.837