Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01161 ATGAGAAACATGGTATGTAATAGGCAAGGAGAGAGGTCTAAGAAGAACATGCAAAGGAAGGATAGGTGTCGTGAACCAAGGGCCATTACCCGCACACGTTGCCAAGCAAGGCTCCGTGTTCGTTTAGGTTACTTGAGTGGAAAATGGACAGTTACTCATTTTGAGCCCAATCATAATCACGAGTTGACCCCATCAACATATGTCCATTTGATTTCTTCATATAGAGGTCTTTCTGAGGGTGATAAGGCTCAAGTGAATAGTTTGCACATGTATGGTGTTCGAACTTGTCATATTTTGGGTTTCATATTAGGTCAGAAAGGGGGGTATGCAGATCTAGGCTTTTGCAAAAAGGATTTGTACAATCATATAGATAAGGACAAAAGGGCTAAAATTAAGGATGGTGATGCTTTTGTTGCCTTATGTTGCCTTCAGATAAACTCATTTATAAAGAGATATGTGCAAAATAAGAATAGTCTTGTTGAATTTTTACACAATTTTGAAAGGGCGGTTAAAGAATATAGACACAATGAGTTGATGTCTGATTTCAAGACTAAGTTTTCTGATCCTGTTCTGAGTATATCTTTGTATAAGTATGAAATTGCTGCATCCAAAGTTTATACAAGGAACAAGTTCTGGGACGTTAGGAAAGAGATTGAAAATGTTGCCGCTCTAAATGTCATTGATAGATCAGAAGTTGATAACAAAGTCAGGGTGAAGATAAACAAGTTTGGAAGTGCTTGTTCTGAGTATGTGGTGATATATGACAAAGATAAAGGGGTTTTCGCTTGTGACTGTCATCTATTTGAGTCTTGTGGCATTCCGTGCTCTCACATCTTTTGCACAATGAAAAATGAGAGTATAGAGGTAATACCTGAATCTTTGATATGCAAGAGATGGACGAAGGCAGCCAAGGATGAATTTATATCTGAATTAAGTGTTGCAGACAATGATTCTAGTAAATTGGATCTGTTGAGGACCAGTGCTGTTGCAGATGCATGTAATAGGCTTTTTAGAGCTACTTGTAAGTATATGGGAAATTATCGTTTAAATATTGATTCAATTAACAAGTTGACTAGTGAGATTGAAAAAAGAGGGAGTTCAGATAAGAACCGCAACAAAGGGTCCAATGTGATTGGTGACCCCATAGTGGTTAAAACTAAAGGTGCTCCACGAAAAGGGAAAAACAGGATGAAAAGCAGACATTGCTCGCATTGTAAGAGGACTGGTCATTATGTTTCTAAGTGTCCTGCTTTGAGAGATCGTGATAAGCTGGGAGAGGTTCAAGTTGACAACATGGCACAAGCTTCAGAAGATTAA 1317 0.3819 MRNMVCNRQGERSKKNMQRKDRCREPRAITRTRCQARLRVRLGYLSGKWTVTHFEPNHNHELTPSTYVHLISSYRGLSEGDKAQVNSLHMYGVRTCHILGFILGQKGGYADLGFCKKDLYNHIDKDKRAKIKDGDAFVALCCLQINSFIKRYVQNKNSLVEFLHNFERAVKEYRHNELMSDFKTKFSDPVLSISLYKYEIAASKVYTRNKFWDVRKEIENVAALNVIDRSEVDNKVRVKINKFGSACSEYVVIYDKDKGVFACDCHLFESCGIPCSHIFCTMKNESIEVIPESLICKRWTKAAKDEFISELSVADNDSSKLDLLRTSAVADACNRLFRATCKYMGNYRLNIDSINKLTSEIEKRGSSDKNRNKGSNVIGDPIVVKTKGAPRKGKNRMKSRHCSHCKRTGHYVSKCPALRDRDKLGEVQVDNMAQASED. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01161 438 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Seca1g01161 438 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g01161 438 ProSiteProfiles Zinc finger SWIM-type profile. 250 286 IPR007527 GO:0008270
Seca1g01161 438 PANTHER OS01G0519700 PROTEIN 155 416 - -
Seca1g01161 438 MobiDBLite consensus disorder prediction 7 22 - -
Seca1g01161 438 SUPERFAMILY Retrovirus zinc finger-like domains 388 420 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01161 Seca-Chr1 16460003 16461955 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g01161 FAR1 1.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01161 - - tpra:123910662 283.108