Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01157 ATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGATGATGTTTCTGGCCTTGAGAAGGCAAAGCAAGCTTTGATGGAGATGGTTATTTTGCCAGCTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAACGATGCTAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTGATTGGTGCGACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAAAGAATATACGTACCTTTACCAGATGAAAATGTTCGGAAACTTCTGCTAAAAAACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAAATGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAACTGGGTTCTAACATTCTCACTGTTAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGATTTCAAGAAAGCAATGGCTACCATCAGACCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAGTTTGGCTCTAATTGA 864 0.4132 MINTAIVDRSPSVRWDDVSGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKNKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQVRGLRYEDFKKAMATIRPSLNKSKWEELERWNEEFGSN. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01157 287 CDD RecA-like_spastin 17 180 - -
Seca1g01157 287 FunFam AAA-type ATPase family protein 183 265 - -
Seca1g01157 287 Pfam AAA+ lid domain 207 238 IPR041569 -
Seca1g01157 287 PANTHER AAA DOMAIN-CONTAINING 1 286 - -
Seca1g01157 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 284 IPR027417 -
Seca1g01157 287 FunFam Spastin, putative 11 197 - -
Seca1g01157 287 Gene3D - 11 281 IPR027417 -
Seca1g01157 287 ProSitePatterns AAA-protein family signature. 154 173 IPR003960 GO:0005524|GO:0016887
Seca1g01157 287 Pfam Vps4 C terminal oligomerisation domain 253 285 IPR015415 -
Seca1g01157 287 Pfam ATPase family associated with various cellular activities (AAA) 52 182 IPR003959 GO:0005524|GO:0016887
Seca1g01157 287 Gene3D - 183 265 - -
Seca1g01157 287 SMART AAA_5 48 184 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01157 Seca-Chr1 16433137 16439165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01157 11 237 Calmodulin-binding Proteins AT3G56690 43.348 9.14e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01157 K13254 - gmx:100780946 530.02