Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01130 ATGGGTAGAGGTAGAGTTGAGCTGAAGAGGATAGAGAACAAGATCAACCGTCAAGTTACTTTCTCAAAAAGAAGAAATGGTTTGCTGAAGAAAGCCTGTGAACTCTCAGTGCTCTGTGATGCTGAGGTTGCACTCATCATCTTCTCAAGTCGTGGGAGGCTCTCTGAATTTGGAAGTTCCCCTGCTGGCATTACCAAAACTATTGACCGATACCAGAGGTACTGTTATGCTCCACAAAACGGTAATATTGAACGAGAAACTGAGAACTGGTACCAAGAGGTCTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAAGACACAAAGGCATTTACTTGGGGAAGATCTTGGACCTTTGAACATAAAAGAGCTACAAAATCTTGAGAAACAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTTCGTAGAAAGGAACGCCACCTTGGAGACATGAATAAGCAACTTAGACACAAGCTTGAAGTTGATGGATTTAATCTGAAAGCTATTGAAAGCTTGTGGAGCTCAACTTCTTCTGCTGCTGGTGGAGATGGCAGCTTTCCCTTGCAGCCTCCTGAAACCAACCACATGGACTGCCAAGCTGAACCTTTCTTGCAAATAGGGTACCATCACTACGTTCAAGCTGAGCCATCCAATGTTCCAAAGAGCATAGCTGGTGAGACTAGCTTTATGCAGGGATGGGTCCTTTGA 744 0.4382 MGRGRVELKRIENKINRQVTFSKRRNGLLKKACELSVLCDAEVALIIFSSRGRLSEFGSSPAGITKTIDRYQRYCYAPQNGNIERETENWYQEVSKLKAKYESLQKTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRKERHLGDMNKQLRHKLEVDGFNLKAIESLWSSTSSAAGGDGSFPLQPPETNHMDCQAEPFLQIGYHHYVQAEPSNVPKSIAGETSFMQGWVL. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01130 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Seca1g01130 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca1g01130 247 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Seca1g01130 247 Coils Coil 121 144 - -
Seca1g01130 247 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca1g01130 247 Coils Coil 87 107 - -
Seca1g01130 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca1g01130 247 Coils Coil 150 170 - -
Seca1g01130 247 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca1g01130 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca1g01130 247 FunFam MADS-box transcription factor MADS-MC 13 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01130 Seca-Chr1 15908589 15914848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01130 1 247 MADS-box Gene Family AT2G45650 63.137 1.75e-110 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca1g01130 K-box 7.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01130 K09264 - gmx:100820061 380.563