Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01127 ATGGTGAGGGGAAAAACTCAGATGAGGCGTATAGAGAACGCCACAAGCAGACAAGTAACGTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAAGCCTTTGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAACTTTATGAATTTGCAAGCTCCAGGTACGGAACATCCTCAACAATTTTTTCTTTTTCTATTTTGTTACAAATTGATAGTGCTATATATTTTGCATCTTCATGTAAATGTTTCTTCAATTTGTCACTAGCTAGTAGATTTCATGCAGACATATTTGTGTGCTTTTACACCACATAG 333 0.3754 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRYGTSSTIFSFSILLQIDSAIYFASSCKCFFNLSLASRFHADIFVCFYTT. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01127 110 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca1g01127 110 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Seca1g01127 110 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Seca1g01127 110 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca1g01127 110 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca1g01127 110 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca1g01127 110 SUPERFAMILY SRF-like 3 64 IPR036879 GO:0003677|GO:0046983
Seca1g01127 110 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Seca1g01127 110 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Seca1g01127 110 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca1g01127 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca1g01127 110 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01127 Seca-Chr1 15855380 15855712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01127 1 60 MADS-box Gene Family AT2G45660 95.000 2.86e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca1g01127 SRF-TF 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01127 - - csin:114271213 122.094