Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01122 ATGGTATATAAGCTTCTTCTTAGAGTCTGTTCTTCCATGTTAGTGTCTCAAAATCCTAGCATGTCACTATTAAATATGTTTTTACAGAAACTTTCCCAATCCTTTTCTCTTCTTTGCATTCAATTACTGCTGATCTTGCTGTGCAGTGCTTCAGTTAATGGAGAGGAGCAAAAGAACTTCTACATTGTTTTCTTGGGAGCTGATCCTGTGAGCAGAGACATTGCACTTGAGACTCATTTAAATGTCCTATCAGCTGTGAAGGGAAGTTATCTTGAAGCCAAAGAATCCTTGGCATATAGCTACACAAAGAGCTTCAATGCATTTGCTGCAAAACTTTCTGAGGATGAAGCCAATATGTTATCTGGTATGGACAATTTTATTCTATTTTTTGTATGTGTAGCTATGGATGAAGTGAATTTGGTATTTAAAAATCAGTACCGCAAGCTACACACAACAAGATCATGGAACTTCATTGGATTACCACTGACTGCTAAGAGAAGATTGAAAGTAGAGAGGGACATAGTTGTTGGTCTTTTGGATACAGGAATCACACCTGAGTCTAAAAGCTTCAAGGATGATGGACTTGGTCCTCCACCAGCAAAATGGAAAGGAAGTTGTGGTCACTATGCAAATTTTACAGGCTGCAATAATAAACTCATAGGAGCCAAATACTTCAAGGCTGATGGAAGAACTGATCCACTTGACATATTATCTCCAATAGATGTTGATGGCCATGGCACTCATACTGCATCAACAGCAACAGGCAATCTGGTTTCTAATGCAAGTCTCTTTGGATTAGCCAATGGGACTGCTCGCGGTGCTGTGCCATCAGCTAGATTGTCAGTTTACAAAGTTTGTTGGTCACTCAGTGGATGTGCAGACATGGACATACTTGCTGCATTTGATGCTGCCATACATGATGGTGTTGATGTCATATCCATTTCCATAGGTGGAGGGAATCCTGATTTTGTCCATGATTCTATATCAGTTGGTGCATTTCATGCCATGAGGAAAGGAATAATCACAGTTGCCTCAGCTGGAAATGATGGTCCAAGTTTGGGATCTGTAACAAATTCTGCACCATGGATTGTAACAGTAGCAGCTAGTGGAATTGACAGAGCTTTCAAGAGCACTGTCCACTTGGGGAGTGGAAAGAATATTTCTGGTATAGGAATAAACTGTTTCAATCCAAAACGAAATGAGTACCCTCTTATCAATGGGATTGATGCAGCCAAGGACTCAAAAAGCAAGGATGATGCTAGATTCTGCTACAAAGAAGCCTTGGAGCCAAATAAAGTGAAGGGGAAGGTTGTTTACTGCAAATTAGATTCATGGGGCGCTGAAGCTGTTGTGAAAGAACTTGGGGGCATGGGTGCCATAATAGAAAGTGACCAATACCCCGATGTTGCTCAAATTTTCATGGCCCCTGCTACCATTGTGAATAATAGCATAGGTGAAAGTATTATCCATTATACAAATTCTACAAGATCATCATCAGCAGTGATATATAAGACTCATGAAGAAAAAAGTCCAGCTCCATTTGTTGCTACATTCTCATCTAGAGGTCCAAATTCAGCATCGCAAAATATTCTCAAGCCTGACATTGCAGCTCCTGGCATTGACATCTTGGCATCTTATACTCTTAGGACATCACTCACTGGTTTGAAAGGGGATACCCAATTTTCAGAATTTTCTCTATTGTCTGGGACTTCCATGGCATGTCCTCATGTTGCAGGAGTAGCAGCATATGTGAAGTCATTTCATCCAGATTGGACTCCTGCTGCAATTAGATCTGCTATTATAACCACAGCCAAACCAATGAGCAGAAGAATTAACAATGAAGCAGAATTTGCCTTTGGTTCTGGTCAATTGAACCCAACAAGAGCTGTGAGTCCTGGTCTAGTCTATGATATGGATGACTTAGGTTATATTCAGTTCTTATGCCATGAGGGTTACAATGGTTCAACTTTATCAGCATTAGTTGGTTCTCCTGTGAATTGCTCATCTTTGCTTCCTGGGTTTGGCCATGATGCTATCAACTATCCAAGCATACAACTTAGCTTGGAAAGCAACAAAGGCACAAAAATAGGAGTATTTAGAAGAACAGTGACCAATGTAGGTCCTGCTCCAACAATCTTCAATGCTACCATTAGATCACCAAAAGGGGTGGAAATCACAGTGAAGCCTACAAGCCTCAATTTTTCTAAAACCAAGCAGAGAAAGAGCTTCAAAGTAGTTGTGAAAGTCAATTCTATTAAAAGTATGCAAATGCTATCAGGTTCCCTTATATGGAGAAGCCCACGTTACATTGTGAGGAGCCCTATTGTTATCTACCGTCAATAA 2343 0.4042 MVYKLLLRVCSSMLVSQNPSMSLLNMFLQKLSQSFSLLCIQLLLILLCSASVNGEEQKNFYIVFLGADPVSRDIALETHLNVLSAVKGSYLEAKESLAYSYTKSFNAFAAKLSEDEANMLSGMDNFILFFVCVAMDEVNLVFKNQYRKLHTTRSWNFIGLPLTAKRRLKVERDIVVGLLDTGITPESKSFKDDGLGPPPAKWKGSCGHYANFTGCNNKLIGAKYFKADGRTDPLDILSPIDVDGHGTHTASTATGNLVSNASLFGLANGTARGAVPSARLSVYKVCWSLSGCADMDILAAFDAAIHDGVDVISISIGGGNPDFVHDSISVGAFHAMRKGIITVASAGNDGPSLGSVTNSAPWIVTVAASGIDRAFKSTVHLGSGKNISGIGINCFNPKRNEYPLINGIDAAKDSKSKDDARFCYKEALEPNKVKGKVVYCKLDSWGAEAVVKELGGMGAIIESDQYPDVAQIFMAPATIVNNSIGESIIHYTNSTRSSSAVIYKTHEEKSPAPFVATFSSRGPNSASQNILKPDIAAPGIDILASYTLRTSLTGLKGDTQFSEFSLLSGTSMACPHVAGVAAYVKSFHPDWTPAAIRSAIITTAKPMSRRINNEAEFAFGSGQLNPTRAVSPGLVYDMDDLGYIQFLCHEGYNGSTLSALVGSPVNCSSLLPGFGHDAINYPSIQLSLESNKGTKIGVFRRTVTNVGPAPTIFNATIRSPKGVEITVKPTSLNFSKTKQRKSFKVVVKVNSIKSMQMLSGSLIWRSPRYIVRSPIVIYRQ. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01122 780 Pfam Fibronectin type-III domain 679 777 IPR041469 -
Seca1g01122 780 Gene3D - 647 779 - -
Seca1g01122 780 CDD PA_subtilisin_like 378 502 - -
Seca1g01122 780 PRINTS Subtilisin serine protease family (S8) signature 171 190 IPR015500 -
Seca1g01122 780 PRINTS Subtilisin serine protease family (S8) signature 241 254 IPR015500 -
Seca1g01122 780 PRINTS Subtilisin serine protease family (S8) signature 568 584 IPR015500 -
Seca1g01122 780 Gene3D Peptidase S8/S53 domain 173 640 IPR036852 GO:0004252|GO:0006508
Seca1g01122 780 ProSitePatterns Serine proteases, subtilase family, serine active site. 569 579 IPR023828 -
Seca1g01122 780 Pfam Peptidase inhibitor I9 61 123 IPR010259 -
Seca1g01122 780 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 93 776 IPR045051 -
Seca1g01122 780 Gene3D - 372 508 - -
Seca1g01122 780 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 48 150 IPR037045 -
Seca1g01122 780 Pfam Subtilase family 172 621 IPR000209 GO:0006508|GO:0008236
Seca1g01122 780 SUPERFAMILY Subtilisin-like 149 634 IPR036852 GO:0004252|GO:0006508
Seca1g01122 780 ProSiteProfiles Serine proteases, subtilase domain profile. 154 630 - -
Seca1g01122 780 FunFam Subtilisin-like protease SBT1.5 173 398 - -
Seca1g01122 780 CDD Peptidases_S8_3 148 604 IPR034197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01122 Seca-Chr1 15782464 15787946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01122 50 618 Subtilisin-like Serine Gene Family AT4G00230 65.026 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01122 - - gmx:100795950 1173.69