Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01120 ATGGATAAATATGGGTCATCTCCTCCATACCGGTATCCAAACCCATATGTGTACCCTCCTAACCCTCATCCACCATACCCACCTCCAAATCCAGCTCCTGATCCATATGCACATGCTCCTTATCCATATCCTTACTTTTCTTCACATTCCTTCAACTATTCCTATCCTCCACCTCCTAGATTACCCCCATCTCCCTCCCATTCTGGTCCATTGGAATATTCTTACCCTCCTCCTCATCAAGCACCCTCCTCAGCCCCTCCTACTGCCCCCTATAGCTACCATCTTCCACCATCTTACCCTTATCCCTACCATATTCCTCCAGGGAGTCATAGTTCTCCTAGTCCTAGGCCTTCCCTTTCACACCATCCCAGTTTACCACATGGATCATCTCATTACTATTATCAACAAAATGAGGCCTATTCATCTCATGAAGATAAACCTGGTGCCCATATGCATGCCAATAGCTTCTCTGGCCCTTACTGGCAGGAGACCCCAAGCTCCACAGGAGGTGAAGAAGTATCACAAATTAGTATTGGTTCCAAGCCTTCTCAGAGTTCTGCTTACCCACCTTTGGATGATCTTATGAACAATGTTCAGTTGTCTGATAACCAGCCAAGTGCTCCTGCATCACCCCCTGCACCTGCAGTGCAGCCACTGATGCATTCCATGTCAGTTCCAAAGATACAACAGAAGAAGGAGGAGTTTTATGGATATTCTAATAACTCCTTCTCGGGTTGGGGATCCTCCTACCCTGGTCAGGTGGATTCATCTAAGCTTTCAGAGTTTTCTGGCTCATTTAATGAATCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAATGCAGAATAAAGGATCTTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATATGGGTTCTTCAAGCCAAAAATCTTCCAAATATGGACATGTTCCACAAAACATTGGGAGACATGTTTGGTAGATTACCTGGTAATGTGAGCAATAAAATTGAAGGAACTGTGAATAGGAAGATTACTAGTGATCCTTATGTGTCAATTTCAGTATCAAATGCTGTAATTGGAAGGACTTTTGTCATTAGCAACAGTGAAAATCCTATTTGGATGCAACATTTCTATGTCCCTGTTGCACATCATTCGGCTGAAGTGCACTTTGTTGTTAAAGATAGTGATGTTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAACAAATATACTCAGGGGAAAAAGTTGAAGGAACCTACCCTATCCTGAATAATAATGGAAAGCCTTGTAAGCAAGGTGTTCCTGGCACATATTTTCCTTTGAGGAAAGGTGGAGCTGTTACTCTATATCAAGATGCACATGTCCCAGATGGAACCCTCCCTAATGTGTTGCTTGACAATGGGGCATATTATGTACATGGAAAGTGTTGGCATGACATCTTTCATTACATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGATGGTCAGTATGGCACAAAGTTAGGTTGGTAAGGGATGCTGGTTATGCATCAGATTATACCTTGGGTGATCTTCTGAGATCAAAATCACAGGAGGGAGTAAGAGTGCTTCTCCTTCTTTGGGATGATCCTACATCAAGAAGCATTTTGGGTTATAAAACTGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGATTTTTTAAGCACTCTTCAGTGCATGTGCTGCTTTGTCCTCGGATTGCTGGAAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACAGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAGATTGTAGCATTTGTTGGTGGACTTGATTTATGTGACGGGCGATATGATACCCCCCACCATCCTCTCTTTAGGACATTGCAGACGCTACATAAAGATGACTATCACAACCCTACTTTCACAGGTAATGTTGGTGGTTGTCCACGGGAGCCATGGCATGATTTGCATTCTAGAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCACATGGGATAAAAAAGTTGAAAATTTCATATGATGATGCTTTGCTAAGGCTGGAAAGAATTCCAGATGTTATTGGCATGACTGATCTTCCCTGTCCTGATGATGATCCTGAAGCTTGGCATGTGCAGATATTTCGTTCAATTGATTCAAATTCTGTTAAGGGATTTCCTAAGAATCCAAGAGAAGCAACTGGAAAGAACCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCCATTCGTGCTGCACAGCATTACATTTATATAGAGAATCAATATTTCATCGGTTCTTCTTTCAATTGGAATCAACACAGAGACCTTGGTGCCAATAATTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATTAAAGCAAATGAGAGGTTCGCAGTGTATATTGTTATACCAATGTGGCCAGAGGGTGTTCCAACAGGCGCTGCCACACAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAGTTTACAAGGCTTTGGTTGAAGCTGGGCTTGAAGCAGCATTCTCTCCACAAGACTACTTGAACTTTTTCTGTCTTGGCAATCGAGAGGCCATAAATATGTATGAAAATGTCAGTGTGTCAGGAAATCCCCCCCCAGCAAATAGTCCTCAATTGCTCTCTATCCAGGCAGCTAGTCGAAATAATCGACGTTTCATGATCTATGTTCATTCGAAAGGCATGATAGTTGATGATGAATATGTAATATTGGGATCTGCAAACATCAACCAACGCTCTATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTACCAACCTCATCATACCTGGGCAAGAAAACATTCTAATCCACACGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGATGACTGCTTCCTGCAACCTGAGAGCCTTGAATGTGTGCGAAGGATTAGATCAATGGGTGAAATAAACTGGCAACAATTTTCAGCAAATGAAGTAACAGAGATGAGAGGGCATCTACTAAAATACCCGGTAGAAGTTGATCGAAAGGGAAAAGTTAGACCCCTTCCGGGCTATGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAACCTAACCATTTAA 3246 0.4196 MDKYGSSPPYRYPNPYVYPPNPHPPYPPPNPAPDPYAHAPYPYPYFSSHSFNYSYPPPPRLPPSPSHSGPLEYSYPPPHQAPSSAPPTAPYSYHLPPSYPYPYHIPPGSHSSPSPRPSLSHHPSLPHGSSHYYYQQNEAYSSHEDKPGAHMHANSFSGPYWQETPSSTGGEEVSQISIGSKPSQSSAYPPLDDLMNNVQLSDNQPSAPASPPAPAVQPLMHSMSVPKIQQKKEEFYGYSNNSFSGWGSSYPGQVDSSKLSEFSGSFNESVHSQSLQIVPMQNKGSLRVLLLHGNLDIWVLQAKNLPNMDMFHKTLGDMFGRLPGNVSNKIEGTVNRKITSDPYVSISVSNAVIGRTFVISNSENPIWMQHFYVPVAHHSAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEKVEGTYPILNNNGKPCKQGVPGTYFPLRKGGAVTLYQDAHVPDGTLPNVLLDNGAYYVHGKCWHDIFHYISQARRLIYITGWSVWHKVRLVRDAGYASDYTLGDLLRSKSQEGVRVLLLLWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNVGGCPREPWHDLHSRIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGMTDLPCPDDDPEAWHVQIFRSIDSNSVKGFPKNPREATGKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNQHRDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETVYKALVEAGLEAAFSPQDYLNFFCLGNREAINMYENVSVSGNPPPANSPQLLSIQAASRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKHSNPHGQIHGYRMSLWAEHTGTIDDCFLQPESLECVRRIRSMGEINWQQFSANEVTEMRGHLLKYPVEVDRKGKVRPLPGYEEFPDVGGKIVGSFLAMKENLTI. 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01120 1081 Gene3D Endonuclease Chain A 465 702 - -
Seca1g01120 1081 SMART C2_3c 294 416 IPR000008 -
Seca1g01120 1081 ProSiteProfiles C2 domain profile. 271 417 IPR000008 -
Seca1g01120 1081 Gene3D C2 domain 288 428 IPR035892 -
Seca1g01120 1081 Pfam PLD-like domain 773 963 IPR025202 -
Seca1g01120 1081 FunFam Phospholipase D 735 973 - -
Seca1g01120 1081 Pfam C2 domain 293 419 IPR000008 -
Seca1g01120 1081 MobiDBLite consensus disorder prediction 104 215 - -
Seca1g01120 1081 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 927 954 IPR001736 GO:0003824
Seca1g01120 1081 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 291 424 IPR035892 -
Seca1g01120 1081 SMART pld_4 927 954 IPR001736 GO:0003824
Seca1g01120 1081 SMART pld_4 588 623 IPR001736 GO:0003824
Seca1g01120 1081 CDD C2_plant_PLD 288 430 - -
Seca1g01120 1081 MobiDBLite consensus disorder prediction 57 90 - -
Seca1g01120 1081 MobiDBLite consensus disorder prediction 157 206 - -
Seca1g01120 1081 FunFam Phospholipase D delta 288 433 - -
Seca1g01120 1081 Pfam Phospholipase D Active site motif 589 623 IPR001736 GO:0003824
Seca1g01120 1081 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 588 623 IPR001736 GO:0003824
Seca1g01120 1081 FunFam Phospholipase D delta 464 702 - -
Seca1g01120 1081 SUPERFAMILY Phospholipase D/nuclease 426 688 - -
Seca1g01120 1081 Gene3D Endonuclease Chain A 737 977 - -
Seca1g01120 1081 Pfam Phospholipase D C terminal 1001 1071 IPR024632 -
Seca1g01120 1081 MobiDBLite consensus disorder prediction 114 142 - -
Seca1g01120 1081 SUPERFAMILY Phospholipase D/nuclease 716 1013 - -
Seca1g01120 1081 PANTHER PHOSPHOLIPASE D 283 1072 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01120 Seca-Chr1 15747529 15756820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01120 64 1081 Phospholipase D Gene Family (Wang group) AT2G42010 68.030 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01120 K01115 - gmx:100791059 1713.35