Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01117 ATGGAACAAGTTAAAGAAGAAAGTGATGCTGGTATCAAAGGGGAAGCCTTGGTTTCAAGTTTTGCACAGTCTGAAAGCAGTTGCGCTAGAGGAACTCACAAGCCAGTTTCTCTTCAAGGGAGGATGACTGGTCCTACAAGACGATCAACCAAAGGAGGCTGGACAGAGCAGGAGGATAAATGGCTGATTGCTGCTGTGAAAACCTATAATGGAAAAAATTGGAAAAAGATAGCTGAATATGTTCCAACTAGAACAGATGTTCAATGCCTCCACCGTTGGCAGAAGGTTCTCAATCCTGATCTTATTAAAGGACCTTGGACAAAACAGGAAGATGATCTAATACGTGAGCTTGTTATGATAAAAGGGAAAAAGAGCTGGTCTGAGATATCAAAGTTCTTGCCTGGTCGCATAGGCAAGCAATGTAGAGAAAGGTGGCATAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACCAAAGAAGAGGAGTTGATTCTTGTCAAGACTCACCAAATGTATGGGAATAGATGGGCTGAAATAGCCAAGTTTCTGCATGGAAGGAGTGAAAACTCTATCAAGAATCATTGGAACTGCTCTATGAAGAAAAAGGTCAATTTAGATGCCTCTCTGCGTCTTCCTCAGTACAACTTAAATCTTAATTTTGAAGAAGGTAAAATGTCTATTGTCAAACAAAGTTCTGAGGAGAAAGAGAATGTGAACATAGACCAAAGAGCAAAGTCCAATTTGGGTTTTGGAATTATATATGCAAGAGAAAACCATGCACAATCATTGAATTCTGAAACTAGTATACATGTCAGAAATGAAGCTGGTTGTTTCACAAAACCACAATCTACATCTGCCCTGAATCAAACAAGCAATGAATCATGTGTTACTCCTTCCCCAGTGAAATTTGAGGCTAATGTCAATAGTGGAAGTATTGAAGGTCCTCAAAACAAGGACAACACATGTGTTAGTTCATTGTGCTACAAGCCCCTTCAACTTAAGGATTTGGACTTTCTTTTGGGAACTGGTAGAAAACCAAGCACTGACAATTATCTACAGAAGAATTCAAATCCTAATGCCCTTTATATTACCCCACCAAACTATACCAAAAGAATGTTTGATGATTGTCCAAGTGCAGCAGATATATTGAGGTCTGCTGCAAGGAGTTTTAAGAACACCCCATCTATCATAAGAAAAGGTAGGACTAAGTTGATAAAGAAAAATACAAGTAGCATTCAATTTTCAAAAGGGGATGTCAGGTTTAACTGCACCAAGAGCCCTAGGAGACTGGATTTTTCTCCATGTGAAAAAGTTGATGCCAACAATGCTGTCCTATATCAGATAGAAGGCTAA 1356 0.3901 MEQVKEESDAGIKGEALVSSFAQSESSCARGTHKPVSLQGRMTGPTRRSTKGGWTEQEDKWLIAAVKTYNGKNWKKIAEYVPTRTDVQCLHRWQKVLNPDLIKGPWTKQEDDLIRELVMIKGKKSWSEISKFLPGRIGKQCRERWHNHLNPDIKRTAWTKEEELILVKTHQMYGNRWAEIAKFLHGRSENSIKNHWNCSMKKKVNLDASLRLPQYNLNLNFEEGKMSIVKQSSEEKENVNIDQRAKSNLGFGIIYARENHAQSLNSETSIHVRNEAGCFTKPQSTSALNQTSNESCVTPSPVKFEANVNSGSIEGPQNKDNTCVSSLCYKPLQLKDLDFLLGTGRKPSTDNYLQKNSNPNALYITPPNYTKRMFDDCPSAADILRSAARSFKNTPSIIRKGRTKLIKKNTSSIQFSKGDVRFNCTKSPRRLDFSPCEKVDANNAVLYQIEG. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01117 451 SMART sant 50 99 IPR001005 -
Seca1g01117 451 SMART sant 154 202 IPR001005 -
Seca1g01117 451 SMART sant 102 151 IPR001005 -
Seca1g01117 451 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Seca1g01117 451 MobiDBLite consensus disorder prediction 26 55 - -
Seca1g01117 451 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Seca1g01117 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 97 IPR017930 -
Seca1g01117 451 CDD SANT 157 197 IPR001005 -
Seca1g01117 451 FunFam Transcriptional activator Myb isoform A 103 154 - -
Seca1g01117 451 Gene3D - 50 100 - -
Seca1g01117 451 Gene3D - 156 246 - -
Seca1g01117 451 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
Seca1g01117 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Seca1g01117 451 CDD SANT 105 149 IPR001005 -
Seca1g01117 451 Pfam Myb-like DNA-binding domain 51 97 IPR001005 -
Seca1g01117 451 SUPERFAMILY Homeodomain-like 52 118 IPR009057 -
Seca1g01117 451 FunFam Transcriptional activator Myb isoform A 50 102 - -
Seca1g01117 451 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Seca1g01117 451 CDD SANT 54 97 IPR001005 -
Seca1g01117 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Seca1g01117 451 Gene3D - 102 154 - -
Seca1g01117 451 Pfam Myb-like DNA-binding domain 106 163 - -
Seca1g01117 451 PANTHER MYB PROTEIN-RELATED 51 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01117 Seca-Chr1 15718433 15723376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01117 39 205 MYB Transcription Factor Family AT5G11510 67.066 2.38e-80 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g01117 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01117 - - zju:132803184 375.941