Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01106 ATGCACACTCCAAACCCACCCCCTTCTTCTTCTTCACCCAATTCCGCCGCCGTTGACACCGAGCCGTTCCTCCTCCGTAGCCGGCGCTTCCTCCGCAGCACACCGCCGCCGCCGCTCCGGACGGCAGCGCGGTTCTTCCGTCGGGCGAGCGGGCAGCGCATGATGCTCCGGGAGCCGTCGGTGAGGGTCCGGGAGGCGGCGGCCGCGGAGGTGGAGGAGCGGCAGAGGGAGTGGGCTTACTCGAAGCCGGTGGTGGCACTGGACGTGGCGTGGAACTTGGCGTTCCTTTTGATTGGAGCCACCGTGTTGGGTTTGAGCAACAAGGAGGAGCCATGTGTGCCCCTAAGGGTGTGGATTATAGGGTACTTGTTGCAGGGTGTGTTTCACTCTCTATGTGTGGTTGTGGAATTCAGAAGGAGGAGGAGGCTATTTGGGGATTCTTCTTCTTCTTCCGTGTTGGACCAGAATGGGGGGTGGGAAAGTGCTCCACAACAATGGAGTTTCAGTTCTGAGAGTGATGATGCTTCAGATCACTTTCTTGAGTCTGATGAAAACAGCATCACGAAACACATAGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATCATTGGGTTCTACTGGGTAACTGCCTGTGGCCAGAGTTTGCCAAGGGATTCACCTCAGCTTTACTGGCTCTGTATTACATTTCTTGCTTTCGACGTTGTCATTGTACTGATCTGTGTTGCTGTTGCATGTCTTATTGGCATTGCTGTTTGCTGTTGTCTTCCATGCATACTTGCTATTTTATATGTAGTGGCAGATCAGGTAAATAAGTTTTTTTTCCTTATTTTATTGTTTATCCTAGAGCAGGAAGGGGCAACCAAGGAAGAGATCGACCAGTTGCCAAAATATAAGTTCAATATAATAAAAGAATTTAAGAAAGAAGGTGATATCCAAGAATCATCCAGAGGAATAATGAGGGAATGTGACAGTGGTACAGCTGCTGAGCATGTTATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGTGTTGAACTTAGAGAACTTCCTTGCAACCACCATTTTCATTGTACATGCATTGACAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGTTCAACATTTTGGGGACTGATAACCACCATCAAGTTTGA 1185 0.4903 MHTPNPPPSSSSPNSAAVDTEPFLLRSRRFLRSTPPPPLRTAARFFRRASGQRMMLREPSVRVREAAAAEVEERQREWAYSKPVVALDVAWNLAFLLIGATVLGLSNKEEPCVPLRVWIIGYLLQGVFHSLCVVVEFRRRRRLFGDSSSSSVLDQNGGWESAPQQWSFSSESDDASDHFLESDENSITKHIESANTMLSFIWWIIGFYWVTACGQSLPRDSPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVADQVNKFFFLILLFILEQEGATKEEIDQLPKYKFNIIKEFKKEGDIQESSRGIMRECDSGTAAEHVIALEDAECCICLSAYDDGVELRELPCNHHFHCTCIDKWLLINATCPLCKFNILGTDNHHQV. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01106 394 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Seca1g01106 394 SMART ring_2 341 381 IPR001841 -
Seca1g01106 394 MobiDBLite consensus disorder prediction 147 175 - -
Seca1g01106 394 Pfam Ring finger domain 340 382 IPR001841 -
Seca1g01106 394 SUPERFAMILY RING/U-box 331 386 - -
Seca1g01106 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 387 IPR013083 -
Seca1g01106 394 PANTHER TARGET OF ERK KINASE MPK-1 49 387 - -
Seca1g01106 394 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01106 Seca-Chr1 15495847 15501088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01106 11 392 C3H Transcription Factor Family AT1G68070 44.330 1.13e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01106 - - gmx:100795425 536.569