Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01105 ATGGAGGCGCCATCAATGCTGGATGGAAAGGGTAGTGGTCATGGTGGTGGTGGTCACAATGAGTTCGAAAGATTCGATGATGAACAATTCATGTCCATGTTCAATGACGAGGTTTCAGGGAACAACAACCCCATGATGCAACCACCCACGTTGTCTTCCTCCAATCCTTCCACACCTTCTGATCATAACAGCATCAATGATGAGAAGGAAACAAACAGAGAGGAGGAAAAACAAGAGGATCAGCAGCAGCAACATCAGAAGCAATTGAAGCTTGAATCAGATGAGGATGAACAGGAAACTATTCGAGTCCACAATGATAGCAATAAGAATGATGATAATAATGCAAATGCAACAACTTGTTCCAATGACAGAATCACAGACCCCAAGAGAGTCAAAAGCATCTTGGCAAATAGGCAATCTGCACAGAGATTAAGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGAGAAGCGTGACTTCATTACAGGCTGAAGTTTCAGTACTGTCTCCAAGGGTTGCATTTTTTGATCATCAGCGGTTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCCGCCCTGGCTCAAGACAAGATTTTCAAAGATGGTACTAATTGCTTTACGTATTACCTTTTACTAAACTATATTATCTCTGCATAA 669 0.4185 MEAPSMLDGKGSGHGGGGHNEFERFDDEQFMSMFNDEVSGNNNPMMQPPTLSSSNPSTPSDHNSINDEKETNREEEKQEDQQQQHQKQLKLESDEDEQETIRVHNDSNKNDDNNANATTCSNDRITDPKRVKSILANRQSAQRLRVRKLQYISELERSVTSLQAEVSVLSPRVAFFDHQRLLLNVDNSALKQRIAALAQDKIFKDGTNCFTYYLLLNYIISA. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01105 222 Pfam bZIP transcription factor 129 170 IPR004827 GO:0003700|GO:0006355
Seca1g01105 222 MobiDBLite consensus disorder prediction 17 31 - -
Seca1g01105 222 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 132 147 IPR004827 GO:0003700|GO:0006355
Seca1g01105 222 Coils Coil 65 95 - -
Seca1g01105 222 SMART brlzneu 125 189 IPR004827 GO:0003700|GO:0006355
Seca1g01105 222 CDD bZIP_plant_RF2 130 180 IPR044759 GO:0003700|GO:0006355
Seca1g01105 222 Gene3D - 128 200 - -
Seca1g01105 222 MobiDBLite consensus disorder prediction 110 124 - -
Seca1g01105 222 FunFam Transcription factor VIP1 128 199 - -
Seca1g01105 222 MobiDBLite consensus disorder prediction 63 109 - -
Seca1g01105 222 PANTHER BASIC LEUCINE ZIPPER 34 22 207 - -
Seca1g01105 222 MobiDBLite consensus disorder prediction 34 62 - -
Seca1g01105 222 MobiDBLite consensus disorder prediction 1 124 - -
Seca1g01105 222 SUPERFAMILY Leucine zipper domain 129 182 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01105 Seca-Chr1 15476248 15477379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01105 16 210 bZIP Transcription Factor Family AT3G58120 56.542 8.54e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g01105 bZIP_1 3.3e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01105 - - gmx:100101873 246.899