Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01102 ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCTGGAGGGGATTCTACCACAAAAAGAGCTAAGTTTGATCAAGAGACTGAAGGAAAGGTCAATGTGGAAACAAATCCTGTTGAGAGAGGCAGCAAAGATCAGGAGCAGCATGTAGATGCTTCAAAAGAAACTAGTGTTGGCACAGTGGCTAGAATTGATAAGTCAGGTTATGACCAGCTTCCAAAAGAATTACATGAAATGAAAATTAAAGATGATAAAGGCAAAAACAACAATGAAAAGGATATAGAAGCAACTGTTGTGAATGGAAATGGAACAGAAACTGGTCAAATAATTACTACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCGGAACGTGTGGTTGGTACTGGTTCTTTTGGTGTTGTTTATCAGGCGAAGTGCCTTGAAACTGGTGAATCAGTTGCTATAAAGAAAGTGTTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCATGCTTGACCATACTAATGTTCTTAAACTAAAGCACTGTTTCTATTCAACGGCCGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTTTGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACATATGCCTATCCTTTATATACAACTGTATACATACCAGATATGCCGTGGCTTAAATTATATGCATCATGTGGTTGGAGTCTGTCATCGTGACATCAAACCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGGGAACCCAACATATCATACATATGCTCACGGTATTATCGAGCTCCGGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATGTTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCAATGTTTCCCGGAGAGAGTGGGGTTGATCAGTTGGTAGAGATCATCAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAATGCATGAATCCAAATTACACAGAGTTTAAGTTTCCTCAGATAAAAGCACACCCATGGCACAAGGTCTTTCACAAAAGAATGCCTTCTGAAGCAGTGGATCTTGTATCAAGGATGCTTCAGTATTCACCTAATCTACGTTGCACTGCTTTGGAAGCATGTGCACACCCTTTCTTTGATGATCTGCGGGACCCAAATACAAGCTTGCCGAATGGGCGAGCAATGCCTCCTTTGTTTGATTTCACAGCTCAAGAACTGGCAGGCGCGCCTGATGAGTTGCGCCGAAGACTCATTCCTGAGCATGCAAGGCATTGA 1395 0.4208 MNMMRRLKSIASGRTSISSDPGGDSTTKRAKFDQETEGKVNVETNPVERGSKDQEQHVDASKETSVGTVARIDKSGYDQLPKELHEMKIKDDKGKNNNEKDIEATVVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGESVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSTAEKDELYLNLVLEFVPETVYRVSKHYVRMHQHMPILYIQLYTYQICRGLNYMHHVVGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPSEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDPNTSLPNGRAMPPLFDFTAQELAGAPDELRRRLIPEHARH. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01102 464 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01102 464 MobiDBLite consensus disorder prediction 46 60 - -
Seca1g01102 464 SUPERFAMILY Protein kinase-like (PK-like) 134 444 IPR011009 -
Seca1g01102 464 Gene3D Phosphorylase Kinase; domain 1 120 214 - -
Seca1g01102 464 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01102 464 MobiDBLite consensus disorder prediction 9 25 - -
Seca1g01102 464 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 100 463 - -
Seca1g01102 464 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01102 464 FunFam Glycogen synthase kinase-3 beta 119 214 - -
Seca1g01102 464 ProSitePatterns Protein kinases ATP-binding region signature. 141 165 IPR017441 GO:0005524
Seca1g01102 464 MobiDBLite consensus disorder prediction 1 67 - -
Seca1g01102 464 FunFam Shaggy-related protein kinase kappa 215 463 - -
Seca1g01102 464 Gene3D Transferase(Phosphotransferase) domain 1 215 463 - -
Seca1g01102 464 CDD STKc_GSK3 130 422 IPR039192 -
Seca1g01102 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01102 Seca-Chr1 15411621 15416887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01102 141 422 Core Cell Cycle Gene Families AT1G76540 35.932 1.24e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca1g01102 Pkinase 2.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01102 K00924 - gmx:100786458 856.284