Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01101 ATGAGACCACCTACAACTCTCATGAAGTGTGATGTGGATATCAGAAAGTACATGTATGGCAACATTGTTCTTAGTGCTGGCTCAACCATGTTCCCTGGTATTGCTGACCGTATGGCAACCATTCCATGTTTCTCTGCCCCTTTTTCACTCTTAGAAAAAATAAATTGTATCATTTGTTTTCACTCCTCAAACCTTTTCCCGTCTCTTCTTTTCTCAAATACTCACCTATTTTCACACTATTTTTTCCCACTTTTTAATTCTCTTTTCTCCTCCTTCCCATAG 282 0.3865 MRPPTTLMKCDVDIRKYMYGNIVLSAGSTMFPGIADRMATIPCFSAPFSLLEKINCIICFHSSNLFPSLLFSNTHLFSHYFFPLFNSLFSSFP. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01101 93 Gene3D - 4 57 - -
Seca1g01101 93 Pfam Actin 6 39 IPR004000 -
Seca1g01101 93 SUPERFAMILY Actin-like ATPase domain 5 50 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01101 Seca-Chr1 15376265 15376546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01101 6 54 Cytoskeleton Gene Families AT5G09810 65.306 1.52e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01101 K10355 - pop:7489063 65.0846