Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01094 ATGAGTTTTGGAGGGTTTCTTGACAACAACAAGCAAGGTGGTGGAGGTGCTAGCATAATAGCAGATATTCCATACAACAACAATAGCATCAGCAACGATAGAATGCCCTCTAGTGCAATCTCACAGCCTCGTTTAGCCACTCCTACTTTAGCCAAATCCATGTTCAACTCACCTGGTCTTTCTCTGGCACTTCAAACAAATATAGATGGACAAGGGGATGTGAACAGATTAATGCCAGAGAATTTTGAGCAAAATGGTTTGAGAAGGAACAGAGAAGAAGAGCATGAAAGCAGATCTGGTAGTGATAATATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCAAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATACAAGAACTTGAAGCGTTGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGGCTTGAACTGAGTAAAAGGCTATGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAACGCCATGAGAACACACTGCTTAGGCAAGAGAATGATAAACTCAGAGCTGAGAACATGTCTATGAGGGAAGCTATGAGGAATCCCATGTGTTCAAATTGTGGAGGTCCAGCTATGATTGGTGAGATTTCACTTGAAGAACAACATCTTAGGATTGAGAATGCTAGATTGAAAGATGAACTAGACAGAGTTTGTGCACTTGCTGGGAAATTTTTGGGTCGCCCCATTCCTTCATTAACAAGCTCAATTGGCCCTCCATTGCCAAATTCAAGTTTAGAGCTTGGAGTTGGGAGCAATGGTTTTGGTGGATTGAACACTAGTGTCCCTTCAACATTGCCTTTGGGTCCTGATTTTGGGATATCAAGTCCTTTAGGCATGGTGTCACCACCACCTCAAACAAGACCAACAACAACTGGCTTTGACAGATCAGTGGAGAGATCAATGTTTCTAGAGCTAGCTTTATCTGCAATGGATGAGTTGGTTAAGATGGCTCAAACTGGGGAGCCTCTTTGGATCAGAAGTTTAGAAGGGGGAAGAGAAATTCTCAACCAAGAGGAATACACAAGGACAATGACTCCTTGCATTGGTTTGAGACCAAATGGTTTTGTCTCAGAGGCTTCTAGAGAAACTGGTATGGTCATTATTAACAGCTTGGCCCTTGTTGAGACTTTAATGGACTCAGTAAGTCATTCAACTACCAATCCACTTTTCCTCCAACTTCTTTTTCCTTTCAATTAA 1275 0.4235 MSFGGFLDNNKQGGGGASIIADIPYNNNSISNDRMPSSAISQPRLATPTLAKSMFNSPGLSLALQTNIDGQGDVNRLMPENFEQNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSMREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPIPSLTSSIGPPLPNSSLELGVGSNGFGGLNTSVPSTLPLGPDFGISSPLGMVSPPPQTRPTTTGFDRSVERSMFLELALSAMDELVKMAQTGEPLWIRSLEGGREILNQEEYTRTMTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSVSHSTTNPLFLQLLFPFN. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01094 424 MobiDBLite consensus disorder prediction 85 101 - -
Seca1g01094 424 Pfam START domain 330 407 IPR002913 GO:0008289
Seca1g01094 424 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 117 412 IPR042160 -
Seca1g01094 424 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Seca1g01094 424 CDD homeodomain 121 178 IPR001356 GO:0003677
Seca1g01094 424 MobiDBLite consensus disorder prediction 82 128 - -
Seca1g01094 424 ProSiteProfiles START domain profile. 321 405 IPR002913 GO:0008289
Seca1g01094 424 Coils Coil 172 207 - -
Seca1g01094 424 Pfam Homeodomain 121 176 IPR001356 GO:0003677
Seca1g01094 424 SUPERFAMILY Homeodomain-like 104 178 IPR009057 -
Seca1g01094 424 Gene3D - 108 194 - -
Seca1g01094 424 FunFam Homeobox-leucine zipper protein HDG1 108 194 - -
Seca1g01094 424 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Seca1g01094 424 SMART HOX_1 119 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01094 Seca-Chr1 15193705 15195765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01094 1 406 Homeobox Transcription Factor Family AT4G00730 58.907 6.89e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca1g01094 START 9.8e-07 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01094 K09338 - gmx:100783614 676.781