Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01082 ATGGTGGAAGATGGTGGAGATGAGGTTGCAGTTGATGCACTTTCCACAGAAGAGTGGTTGTTACATGCAAAGGAACTTGTTCCTATTGCTCTTGATAAGGCAAGAGAGGTTAAAGGGTTTCCTGGTAGATGGAAAATGATCATTTCCAAATTAGAACAGATCCCATCTTGTTTATCAGACTTGTCAAGCCATCCATGCTTCTCAAAAAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTCAAAGAAGCAATTGAATTAGCTGAGTTGTGTGTGAAGGAAAAGTATGAGGGTAAGCTTCAGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTTGATTTGAATTTAAGGGATTGTGGGCTTTTGATCAAGACTGGTGTTCTTGGTGAGGCTACTTTGCCATTAGCCATGGCTATGTCTTGTTCTGTGGCAGAATCAGATGCTGCAACACACAACAACATAAGGGAATTGCTGGCGCGCCTTCAGATCGGTCACTTGGAATCAAAGCACAAAGCTTTAGACAGCCTTGTTGAAGTTATGAAAGAAGATGAAAAGAATGTTTTAGCTGTTCTTGGTAGAAGCAACATTGCTGCTTTGGTTCAATTGCTTACAGCAACATCTCCAAGGATAAGAGAGAAGACAGTTACTGTTATATGCTCACTTGTAGAATCAGGAAGCTGTGAGAATTGGCTTGTTTCTGAAGGAGTTCTACCACCTCTCATAAGGCTTGTTGAATCAGGCAGTGCTGTAGGTAAAGAGAAGGCCACAATATCCCTTCAGAGGCTGTCAATGTCAGCAGAAACAGCACGCGCAATCGTTGGACATGGTGGGGTTCGTCCACTGGTTGATCTTTGTCAAACTGGTGATTCTGTTTCACAGGCTGCAGCAGCTTGTACTCTGAAGAATATATCAGCTGTTCCTGAAGTGAGACAGGTTTTGGCTGAAGAAGGGGTAGTGAGGGTAATGATCAATCTTCTTAACTGTGGAATGTTGTTAGGTTCCAAAGAGTATGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGGAGAAGTGTTATATCAGAAGGTGGTGTTAGGAGTCTTTTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCTGTTGGGGCATTGAGGAATTTGGTTGGATCAGTTTCTCAGGAAACTTTGGTTTCATTGGGTTTGCTTCCCCGTTTGGTTCATGTGCTAAAGTTTGGATCTTTAGGTGCACAACAAGCTGCTGCATCTGCAATCTGCAGGGTTTGCAGCACATCAGAGATGAAGAAAATGGTTGGTGAAGCTGGGTGTATCCCTCTCCTTGTGAAGATGCTTGGGGCTAAATCAAACAGTGCTAGAGAGGTTGCTGCACAAGCAATTGCAAGCTTGATTGTTCTGTCTCAGAATTGCAGAGAAGTTAAGAAGGATGATAAGAGTGTGCCAAATTTGGTTCAGTTGCTTGATCCAAGTCCACAGAACACTGCAAAAAAATATGCAGTTTCATGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAACTTATGATCTCATATGGAGCAATTGGGTATCTGAAGAAACTTACTGAAATGGACATTCCAGGGGCTAAGAAGTTACATGAGAGATTGGAGAGAGGGAAATTAAGAAGTTTATTTAGCAAGAAATAG 1689 0.4221 MVEDGGDEVAVDALSTEEWLLHAKELVPIALDKAREVKGFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKEAIELAELCVKEKYEGKLQMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLAMAMSCSVAESDAATHNNIRELLARLQIGHLESKHKALDSLVEVMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLVESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVRPLVDLCQTGDSVSQAAAACTLKNISAVPEVRQVLAEEGVVRVMINLLNCGMLLGSKEYAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVSQETLVSLGLLPRLVHVLKFGSLGAQQAAASAICRVCSTSEMKKMVGEAGCIPLLVKMLGAKSNSAREVAAQAIASLIVLSQNCREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKK. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01082 562 SMART arm_5 473 515 IPR000225 GO:0005515
Seca1g01082 562 SMART arm_5 310 351 IPR000225 GO:0005515
Seca1g01082 562 SMART arm_5 352 391 IPR000225 GO:0005515
Seca1g01082 562 SMART arm_5 432 472 IPR000225 GO:0005515
Seca1g01082 562 SMART arm_5 392 431 IPR000225 GO:0005515
Seca1g01082 562 SMART arm_5 269 309 IPR000225 GO:0005515
Seca1g01082 562 SMART arm_5 187 227 IPR000225 GO:0005515
Seca1g01082 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 560 - -
Seca1g01082 562 Gene3D - 154 336 IPR011989 -
Seca1g01082 562 Gene3D - 337 545 IPR011989 -
Seca1g01082 562 SUPERFAMILY ARM repeat 158 539 IPR016024 -
Seca1g01082 562 Pfam Armadillo/beta-catenin-like repeat 273 309 IPR000225 GO:0005515
Seca1g01082 562 Pfam Armadillo/beta-catenin-like repeat 433 470 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01082 Seca-Chr1 14945019 14948771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01082 208 470 U-box Gene Family AT3G54790 29.104 7.20e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01082 - - gmx:100789140 941.028