Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01081 ATGGCAGAATCTGAAGCTAAGAGTTATAGTTCTTGTGCTACCAAGAATGTGTCTCTCAAATCTAACAAAGTAAGCAGCATCAAAAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTAGCAGAGATCAAAGACTCTTCTCAACATGTGAGGTTATGGCTTGGAACCTATGACACACCAGAAGAGGCTGCAAGGGCTTATGATGAAGCAGCTAGAGCTCTACGTGGGGAAAATGCAAGAACCAATTTTGCATCATCATTGAACCAAACCACAAATACTAATTCACTTTCCAATGATGCAAAACATGGGTTGAGTTTTGCTTCCTTGAAAGCCAAGTTAAGCAAGAATCTTCAGAGCATCATGGCCAAGACTAGTAGTGATTGCAAGTCATCAAAGAGCAGAGTGAGTGACCATTTTACCTTTGCTACCATATTCCACCGTAGGAGTACTTATAACCACCAAATCCCTTCAGTGGATGTTGAGAATTTGGTGCAGCCTAGCATTGTTGTGCCCCCTGTTGAACCTGACCCTGCTTCTTGGGAAACTAATTCTAGTGTTTCTGAGTGGATTGGGTTCAAGCAACCTGTAGGAGGAGGGGATTTAAGGGTTGGTGATGAAGGGTCTTTGGATCAATTGATGGGGTGGGTGGATAGCTCAGATAATGGAGGAAGTGAGGGATCAAGGAGCAAGAGGTTCAAGGTCTCTCCTTCTGTGCTTGTGCCTCCAACTTTCACTGATTGTGGTTCTCCTTTTAGTTGTGGCTCTCCTTATCATGGTTATGGATCCCCTTATAGTGGTTGTGACTCTCCATATAATGGTTATGGCTCTCAATTTAAATAG 846 0.4385 MAESEAKSYSSCATKNVSLKSNKVSSIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFASSLNQTTNTNSLSNDAKHGLSFASLKAKLSKNLQSIMAKTSSDCKSSKSRVSDHFTFATIFHRRSTYNHQIPSVDVENLVQPSIVVPPVEPDPASWETNSSVSEWIGFKQPVGGGDLRVGDEGSLDQLMGWVDSSDNGGSEGSRSKRFKVSPSVLVPPTFTDCGSPFSCGSPYHGYGSPYSGCDSPYNGYGSQFK. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01081 281 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Seca1g01081 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 138 - -
Seca1g01081 281 FunFam ethylene-responsive transcription factor RAP2-11 28 87 - -
Seca1g01081 281 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Seca1g01081 281 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Seca1g01081 281 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Seca1g01081 281 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Seca1g01081 281 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Seca1g01081 281 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Seca1g01081 281 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01081 Seca-Chr1 14930591 14931436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01081 29 89 AP2-EREBP Transcription Factor Family AT5G19790 70.492 4.24e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g01081 AP2 8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01081 K09286 - gmx:100799444 308.145