Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01080 ATGTTGGGTTCAGGTACCAATTTGGTGACTACTGTCATTGGGTTTGGTATGAGTGCGACTTTCATTGTGTTTGTCTGCACAAGAATAATTTGTGGAAGGTTAAGAGGGGGTGTTGAATCTCGGATGATGTATGAGATTGAATCAAGATTTGATCTAGAACAGCCAGAACATCATGTTAATGACAATGAACCTGAACCTGTTATGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCATTGAAGATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACATGTCCGGTATGCCGTCTGCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCTGTTGATGAGTCTCATTCATCAGAAAGGAATGAAGATATTGAGAGGCATGTTGAACCTACTGCTGGTAACTCCATACCACCAACTTCTGGTGAACCAGAAGCAAGACAATGA 573 0.4049 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRFDLEQPEHHVNDNEPEPVMLDAIPTLKFNQEAFSSIEDTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSVDESHSSERNEDIERHVEPTAGNSIPPTSGEPEARQ. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01080 190 MobiDBLite consensus disorder prediction 158 172 - -
Seca1g01080 190 PANTHER OS11G0150450 PROTEIN 1 164 - -
Seca1g01080 190 MobiDBLite consensus disorder prediction 151 190 - -
Seca1g01080 190 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Seca1g01080 190 Pfam Ring finger domain 89 132 IPR001841 -
Seca1g01080 190 SMART ring_2 90 131 IPR001841 -
Seca1g01080 190 SUPERFAMILY RING/U-box 80 139 - -
Seca1g01080 190 CDD RING-H2_EL5-like 89 132 - -
Seca1g01080 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01080 Seca-Chr1 14896496 14898208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01080 79 135 C3H Transcription Factor Family AT4G10160 56.140 1.37e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01080 - - gmx:100780922 357.836