Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01076 ATGGGCGTTGGTGGTAATTTCTGGGACCTGTTGAAGCCCTATGCACGCAACGAAGGTTTTCATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTCTCCTTCTGGATTGTTCAGCATGGGAATGCCATCAAGAACCATGTCAGGAAACCCCACCTCAGGCTCACTTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCGGTGTTTGTTGTTGATGGGACACCGTCGCCACTGAAATCACAGGCCAGGATTGCAAGGTTTTTTCGATCTTCTGGCATTGAATTGACAAGCTTGCCAGTGCCTGAAGAAGGTGTTTCAGCGGAGAGGAACAGTTCATTTTCACGTTGTGTTCAAGAATGTGTGGTACTTCTTGAGCTACTTGGAATGCCTGTATTGAAGGCTAAAGGAGAGGCTGAAGCACTCTGCGCGCAATTAAATAATGCAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCGAAATGCATTATAAAATGTTTCTCTCCCAGTTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGACTGAAGAGGAAACACTTAATAGCTATCTCACTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCAAGGGATTGGGCTTGATACTGCTCTCCATTTTGTTCAAGCTTTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGCCAAAGGAAAGGCTTCACATGTTCCTATCAGCATTAGACCTAACGACAATATGGATATGGATGGGAACTCCCCAAATACAAAACAACCTCACTGCTCATTCTGTGGGCATCCAGGCAGTAAAAGAGATCATATGAAGTTTTCCTGCGAATATTGCATCTCAAATGACAATGAAGGTTGCCTGAGAAAACCAGAGGGTTTTAAATGTGATTGTGTCTCTTGTGGTATGAATAAGAAACATAAGGAGCAGCAAAGGCTGGAAAATCGGCACTCAAAAATTTGTCAGAAGATTGAAAAGGAGCCAAATTTTCCGAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTATTTTTCTGTAAATGATGGCCCTCAGATCTTTTGGGGAAAACCAAATATTGAGATGCTGATTGATTTTTTTAATTTCCATCAGCACTGGAATCCATCCTACATTCGACGAATGATGTTTCCTATGATGTCCACCATCTTTTTGAGAGATATGGCTACACCTACAGCTACAGAAGAAAGTTTGTTATTTGGGCAATATAAGTTTGATTCTTTAAAACGTGTGAAGATGAGATATGGACATGAGTTTTATGTTGTCAAGTGGAAACGTGCAGTGGGCAATATTTCCCTTAAAATTCAATCAAATGAATCTGTCACGGAACAAGATGTTAGAGAGCATGATGAAATGGTGGATCTACTTGATGACTGTGATGTTCCTGAGATTCATGAAGATGATGGATGTAGTTTTCTGTTGACAGACGAAAATATGGACCTTGTAGGCGCAGCTTTTCCAGAAGAAGTCAAAAGATTTTGGCAGGAACAGGAACTGAAGGATATGAAAAAAAGAAAGAATTCAACCCCCAGATCTCAAGAAAATGAAAAATCAGCATCACCAAACTCAAGAAGCATCCAGCTAAACATTACAGAGTTCTACCAATCAACCAAAATTAAACATAATAAATCAAAACAAGGAGAAGAGTCATCCAAGAATGTTGATGATGGCCAAGGCAGTGGAGGCTCAAAAATGAAAAGGAAATCGTCAAGTTCTAATCTTTCAAAATCTGTGAGGCGTCGCCTTTTATTTGATTAA 1839 0.4013 MGVGGNFWDLLKPYARNEGFHFLRNKRVAVDLSFWIVQHGNAIKNHVRKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVPEEGVSAERNSSFSRCVQECVVLLELLGMPVLKAKGEAEALCAQLNNAGHVDACITADSDAFLFGAKCIIKCFSPSSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVQGIGLDTALHFVQAFSEDDILNRLHEIAKGKASHVPISIRPNDNMDMDGNSPNTKQPHCSFCGHPGSKRDHMKFSCEYCISNDNEGCLRKPEGFKCDCVSCGMNKKHKEQQRLENRHSKICQKIEKEPNFPKDEIIDMYLCNDNGYFSVNDGPQIFWGKPNIEMLIDFFNFHQHWNPSYIRRMMFPMMSTIFLRDMATPTATEESLLFGQYKFDSLKRVKMRYGHEFYVVKWKRAVGNISLKIQSNESVTEQDVREHDEMVDLLDDCDVPEIHEDDGCSFLLTDENMDLVGAAFPEEVKRFWQEQELKDMKKRKNSTPRSQENEKSASPNSRSIQLNITEFYQSTKIKHNKSKQGEESSKNVDDGQGSGGSKMKRKSSSSNLSKSVRRRLLFD. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01076 612 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Seca1g01076 612 SMART xpgn3 1 96 IPR006085 GO:0004518
Seca1g01076 612 SMART xpgineu 128 198 IPR006086 GO:0004518
Seca1g01076 612 CDD PIN_GEN1 2 202 - -
Seca1g01076 612 MobiDBLite consensus disorder prediction 540 564 - -
Seca1g01076 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Seca1g01076 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Seca1g01076 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Seca1g01076 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Seca1g01076 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Seca1g01076 612 Gene3D - 198 256 - -
Seca1g01076 612 MobiDBLite consensus disorder prediction 528 612 - -
Seca1g01076 612 FunFam Flap endonuclease GEN-like 1 198 256 - -
Seca1g01076 612 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 550 IPR006084 -
Seca1g01076 612 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Seca1g01076 612 FunFam Flap endonuclease GEN-like 1 2 197 - -
Seca1g01076 612 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Seca1g01076 612 Gene3D - 3 197 - -
Seca1g01076 612 MobiDBLite consensus disorder prediction 580 605 - -
Seca1g01076 612 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Seca1g01076 612 MobiDBLite consensus disorder prediction 565 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01076 Seca-Chr1 14839004 14844056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01076 16 245 Core DNA Replication Machinery Family AT5G26680 30.000 2.89e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01076 K15338 - gmx:100779848 950.658