Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01071 ATGGCGAACCCAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTGCAGGCAAATGGGGTTGAGCTACGAGGTTGCAAGATCAAGTACTGTGATTCCAGAAAAGGATTTGGCATCTTTTCTGATAAAAATGTTTCTGACGGTGTTCTGTTGGTTGTTCCACTAGATTTAGCAATTACTCCAATGAGGGTGTTGCAAGATCCTCTTCTAGGACCAGAATGTAGAGCAATGTTTGAGGAAGGAGATGTAGATGACAGGTTATTAATGATGCTGTTACTGACAGTTGAGCGTTTGCGTAAGAATTCTCTATGGAAGCCGTACTTTGATATGCTTCCAACCACTTTCGGAAATTCACTTTGGTTTAGTGATGATGAACTTCAAGAATTAAGAGGAACAACATTATATCGTGCAACTGAATTGCAGAAGAAAAGCCTGCTGTCTTTGTATGAAACTAAAGTGAAGGATTTAGTGAAGAAACTTTTGACTCTTGATGGAGATTCAGAGATTGAGGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGCCGTGCTTTGAACATCCCAATGCCTCGTTCTTATGTATTTCCAGAAATGCAAGAAGTTCATGAAAGTTGCATTCCAGAAGCTGATGAAAAAGGGAGTCAGGTTACAAAATCTGAAAATCTAACCAAGGAAATGACAGGTAGCACAGTGCAAGGAGACACTGTTTGGGTAGAGGGTCTCGTCCCTGGCATTGACTTTTGCAACCATGATCTCAAGCCAATAGCAACATGGGAAGTTGATGGAACTGGTTTAACAACAGGAGTTCCTTCCTCCATGTATCTTCTTTCAGCTGCTCAAAGTCCCTTGCAGATTGATCGTGAAATTTCCATTAGTTATGGCAACAAAGGGAATGAGGAACTTCTATACTTGTATGGTTTTGTCATTGATGATAACACAGATGACTATCTCATGGTCCACTATCCAACAGAAGCAATTAATAATATTTCTTTTTCAGAATCCAAGGGCCAGCTTCTTGAAGCACAGAAAGCTGAAATGAGATGTCTTTTACCCAAAACTCTTCTGGATCATGGATTTTTTCCTTTAGGCACCCAAAACAGTGGAGAAAATAACAAGTGCAACCAAGTTTCTAACTACAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGCAAACAAGCTGGTTTTTCCTGAGAAATTTATGACTGCCTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTACAAGGTTTCCTCAATGCTGGAAGAGGTGCAGTTTCTATGCAATATTAGCTTGTTGGACCTGAAGGGGAGAGACAACTATCAGATATAG 1338 0.4073 MANPEAKLETFMQWLQANGVELRGCKIKYCDSRKGFGIFSDKNVSDGVLLVVPLDLAITPMRVLQDPLLGPECRAMFEEGDVDDRLLMMLLLTVERLRKNSLWKPYFDMLPTTFGNSLWFSDDELQELRGTTLYRATELQKKSLLSLYETKVKDLVKKLLTLDGDSEIEVCFEDFLWANSVFWSRALNIPMPRSYVFPEMQEVHESCIPEADEKGSQVTKSENLTKEMTGSTVQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLTTGVPSSMYLLSAAQSPLQIDREISISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPTEAINNISFSESKGQLLEAQKAEMRCLLPKTLLDHGFFPLGTQNSGENNKCNQVSNYSWSGQRKMPSYANKLVFPEKFMTALRTIAMQEDELYKVSSMLEEVQFLCNISLLDLKGRDNYQI. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01071 445 Pfam SET domain 35 296 IPR001214 GO:0005515
Seca1g01071 445 Gene3D set domain protein methyltransferase, domain 1 5 310 - -
Seca1g01071 445 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 426 - -
Seca1g01071 445 SUPERFAMILY SET domain 7 314 IPR046341 -
Seca1g01071 445 CDD SET_LSMT 31 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01071 Seca-Chr1 14796475 14804857 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g01071 SET 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01071 - - gmx:100777394 730.709