Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01065 ATGGCTGAAACACTGCTCTTTACTGTTGCAGACTCACTTATAGGGAAGCTTGCTTCTCGTGCAGTTGAAGAAGCTACTCTGGTGCTGGGTGTGTATGATGATCTGCAAGAGATCAAAGACACCGTGTCATTAATCAAAGCTGTGTTGTTGGATGCTGAGCAAAAGCAGGATCAGAACCATGAGTTGTGTGAATGGCTGAGGCAGATTAAGCATGTCTTCTCTGCTGTTGAAAACATAATCGATGATTTTGCATGTGAGGCTTTAAGGAAGCATGTGGTCAACACTTATGGTAGCAATGCAAGGAAGGTAAGGCGTTTCTTCTCATGTTCTAATCCTTTTGTTTACCGTTTAAGAATGGCACATCAGATCAAAGATATCAAAAAGAGATTAGACAAGGTTGGAATTGATAGGCATAAGTTTAGCCTTCAAACCAATGTTATTGATAAATGTGTTGTGCTAAGGAGGGAATTGACTCACTCACATGTAACTAATTCAGATGTGATAGGAAGGGAACATGATAGAGAAAAAATTAGAGAGCTCTTATTGCTTGATGGTGATGATGCAAGTCTCTCTGTCATCCCCATTGTGGGAATTGGAGGCTTGGGAAAGACCACACTTGCAAAGTCGGTCTTCAATGATAAGAGTATAGATGAGTCTTTTCCATTAAAGATGTGGGTGTGTGTCTCTGATGATCTTGAACTTAAACATGTGCTTGTTAAAATCCTCAATTCTGCTGCTGTCAGTCCTTCTGAAAACTTTAGAAACTTTGATATGGAGCAACTACAAAACCATCTAAAAAGAACACTTATTGGTCAAAAGTTCTTGCTTGTCTTGGATGATGTATGGAGTGAGGATCCTGTTAAATGGGTTGAGTTGAAGAATTTAATACATGTAGGTGCTGAAGGAAGTAAAGTCCTAGTAACTACACGTAGCCACTCAATAGCTACCATGATGGGCACTAACTCATCTTACATCTTACAAGGTCTTTCTCAAGAGGATTCCTTATCCGTATTTGTCAAATGGGCTTTCAAAGAAGGGGAAGAGAAAAAGTATCCAGAATTGTTGGAAATTGGGAAACAAATTGTGCAAAAATGTGGAGGGCTTCCGTTGGCGGTAAGAACATTGGGGAGTTCATTATTCTTAAAAGTTGACATAGAAGAGTGGGAGTTTATTAGAGACAGTGAGATTTGGAATTTGCCACAAAAAGAAGGTGACATTTTGCCTGCCCTCAAATTAAGTTATGATCAAATGCCTTCATATTTAAAACGATGTTTTGCTTGCTTCTCCCTTTTCAAGAAGGACTTTAGGTTTTGTAGTTTTCGTATTGGTTTGTTATGGGAAGCACTTGATTTCCTTCCATCATCACCAAAGAAAGGCAAAACATTGCAAGATGTTGGCAATCAATTTCTACATGAGCTGCAATCAAGATCTTTTCTTCAAGATTTTATTGACTATGGTAGTGCTTGCACATTTAAACTACACGACTTGGTGCATGATCTCGCATTGTATGTTGCAAAAGATGAGTTTCAACGATTGAATTCCCAGAGTGAGAATATATCTGAGAATGCCTTGCACTTGTCATTTATTAAAGGTGATTTGCTTGGCCAAGCTCCCATTCCCATTGGTCTTAGAACCATATTTTTTCCTGAAGGAGCCAACAACGAAGCTTTCTTGAATATAGTGGTGACGAAATGCAAATACTTGCGAGTTTTGGCTTTACATAATTCTGAATATGTGAATTTTCCTTGCTCCATTAGTAAGTTGAAACATTTAAGATGTCTAGATCTTTATCTTAATAAAAAACTAGAGAGTCTCCCTAATTCAGTATGCAAACTTCAAAATTTGCAAACTTTGGTTCTCACAGGATGCACAAAGCTACAAACATTGCCTAAAGGATTAGGAAACTTGATTAGCCTCCGGAATTTGCATATAACCACAAAACAGTCTAATAATTTTCTGGACAAAGTGATTGCAAAATTGACTTCTCTAGAAATTTTATCCTTCACTGCTTGTGACAATCTGGAGTCATTGTTCGAAGGGATACTACTTCCTAGTCTTAAAGTCTTGTACATTGAATCTTGTGGGAGTCTAAAGTCTTTGTCGCTTCATGGTATTCCAAACCTAAAAATTTTGGTGATTCGAAGGTGCAATAAATTGGAATTGGCAATGGACCATGATGACCAAATCCCTGAGCTAAGGTTGAAGTTACTATCTTTTGAATATTTGCCAAATCTGGTGACTTTTCCTCACTGGGTGCAAGGATCTGCAAAAACATTACATTCTTTGGTAATTGAAGGTTGCGACAATCTTGAGGAGCTTCCTGAGTGGCTTTCAACTCTGACTGGTCTCATAACATTCTTTATTACTGATTGTCCAAAGCTTCTTTCACTCCCTGATGACATGCATTGCCTCCCCAAACTTGAGCATTTAGCAATTAAAAATTCTCCTAAATTATTTAGAAGATACCAGCCAGAAGTTGGACAGGATTGGTTCAAAATATCCCACATCAAACGAGTTACCATTGAGGAACCAGAAGAGAAAGGAAAATTCTTGGATAATAAAGTATTAAATTGA 2574 0.38 MAETLLFTVADSLIGKLASRAVEEATLVLGVYDDLQEIKDTVSLIKAVLLDAEQKQDQNHELCEWLRQIKHVFSAVENIIDDFACEALRKHVVNTYGSNARKVRRFFSCSNPFVYRLRMAHQIKDIKKRLDKVGIDRHKFSLQTNVIDKCVVLRRELTHSHVTNSDVIGREHDREKIRELLLLDGDDASLSVIPIVGIGGLGKTTLAKSVFNDKSIDESFPLKMWVCVSDDLELKHVLVKILNSAAVSPSENFRNFDMEQLQNHLKRTLIGQKFLLVLDDVWSEDPVKWVELKNLIHVGAEGSKVLVTTRSHSIATMMGTNSSYILQGLSQEDSLSVFVKWAFKEGEEKKYPELLEIGKQIVQKCGGLPLAVRTLGSSLFLKVDIEEWEFIRDSEIWNLPQKEGDILPALKLSYDQMPSYLKRCFACFSLFKKDFRFCSFRIGLLWEALDFLPSSPKKGKTLQDVGNQFLHELQSRSFLQDFIDYGSACTFKLHDLVHDLALYVAKDEFQRLNSQSENISENALHLSFIKGDLLGQAPIPIGLRTIFFPEGANNEAFLNIVVTKCKYLRVLALHNSEYVNFPCSISKLKHLRCLDLYLNKKLESLPNSVCKLQNLQTLVLTGCTKLQTLPKGLGNLISLRNLHITTKQSNNFLDKVIAKLTSLEILSFTACDNLESLFEGILLPSLKVLYIESCGSLKSLSLHGIPNLKILVIRRCNKLELAMDHDDQIPELRLKLLSFEYLPNLVTFPHWVQGSAKTLHSLVIEGCDNLEELPEWLSTLTGLITFFITDCPKLLSLPDDMHCLPKLEHLAIKNSPKLFRRYQPEVGQDWFKISHIKRVTIEEPEEKGKFLDNKVLN. 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01065 857 SUPERFAMILY L domain-like 492 819 - -
Seca1g01065 857 CDD RX-CC_like 9 133 IPR038005 -
Seca1g01065 857 Pfam Rx N-terminal domain 11 98 IPR041118 -
Seca1g01065 857 Gene3D - 328 412 IPR042197 -
Seca1g01065 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 427 IPR027417 -
Seca1g01065 857 Gene3D - 413 503 IPR036388 -
Seca1g01065 857 Pfam NB-ARC domain 172 414 IPR002182 GO:0043531
Seca1g01065 857 PRINTS Disease resistance protein signature 268 282 - -
Seca1g01065 857 PRINTS Disease resistance protein signature 610 626 - -
Seca1g01065 857 PRINTS Disease resistance protein signature 365 379 - -
Seca1g01065 857 PRINTS Disease resistance protein signature 192 207 - -
Seca1g01065 857 Gene3D - 10 124 - -
Seca1g01065 857 FunFam Probable disease resistance protein At1g61300 152 323 - -
Seca1g01065 857 Gene3D Ribonuclease Inhibitor 543 846 IPR032675 -
Seca1g01065 857 PANTHER DISEASE RESISTANCE PROTEIN RP 35 739 IPR044974 GO:0006952
Seca1g01065 857 Gene3D - 150 326 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01065 Seca-Chr1 14725597 14728191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01065 190 799 WRKY Transcription Factor Family AT5G45050 22.650 2.04e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01065 - - gmx:100780033 1046.57