Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca1g01038 | ATGAAGTGTCACTCTGAGAAAGAAAGAGTGTCTAATAATAACAGTTTGGATGATCAAGATTCATGGACTAACAATGCTAGCCAATCTGATACTGAAGCTACTGTTCCAAATCGTAGGAGAAGATCCAAGAGAAGAAGAACAAGGTACATGACCACCCCAGTAACTTCTTCTATGTCTTTTGTTGCTGCCAATCCTTCTTCCTCTGTTTCTGAGGTAGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATTATGCTTAGCAGAGATATGAGTCCTTGGGGTGGTCTCAATTCTTTTGCTGCTGAATCCTCTGACAACAACTCATTGCAATTGGAAGCTCCATCTAAGATTGAAATGGTAAAAGTGGCCAAACCAAAGGACAATAAATTGGAGTTTGGCAATTCAGTTTCCCCAAATCTCAATTCCAAAGGGAAAAGTTCACAACTTTTGGCTAATGCGAGTCCTGGAAATGGATTCAGGATGCAAAGAAACAGAGTTTTCATCAAGAATGGGAAGCTTGAGATTGATTCTGAGTCAGCAGCATTTGAGTCAGACATTAATAATAATAAGTACACTTCAATCAAGGCAAAGTTTTTGCATTCTGAACCCAAGTCAAGTTCTTTGAAGAACAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCCCTCCTACCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAATATCAACAGTAATTGCTTTGCTTCAAGGAATGAAAGCAGTGAAAACAACATTGAATTGGAACCAGACCTCTCCCCTAACCCAATAGCAACAGAAAGTAATAAGCTCATGAAGAACACTGACAACAATGGGGTAGACACAGGTAGAGAGTCCAAGAACAGTAGCAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGGCAAGCCTTAGGTGGTCACAAGAGATCTCATTTGGCTAGTGAATCTCACAGTCAAACAGTGGTGCTTCAGGAAGCAGTTCCAGAAATAAGGAACTTCCTTGATCTTAATTCTTAA | 1050 | 0.4057 | MKCHSEKERVSNNNSLDDQDSWTNNASQSDTEATVPNRRRRSKRRRTRYMTTPVTSSMSFVAANPSSSVSEVEQEQEEVAMSLIMLSRDMSPWGGLNSFAAESSDNNSLQLEAPSKIEMVKVAKPKDNKLEFGNSVSPNLNSKGKSSQLLANASPGNGFRMQRNRVFIKNGKLEIDSESAAFESDINNNKYTSIKAKFLHSEPKSSSLKNKNSHKRGKFECTTCNKIFPSYQALGGHRASHKNINSNCFASRNESSENNIELEPDLSPNPIATESNKLMKNTDNNGVDTGRESKNSSKGHECPICLKVFPSGQALGGHKRSHLASESHSQTVVLQEAVPEIRNFLDLNS. | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca1g01038 | 349 | SUPERFAMILY | beta-beta-alpha zinc fingers | 219 | 322 | IPR036236 | - | |
| Seca1g01038 | 349 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 348 | - | - | |
| Seca1g01038 | 349 | MobiDBLite | consensus disorder prediction | 255 | 299 | - | - | |
| Seca1g01038 | 349 | Pfam | C2H2-type zinc finger | 300 | 324 | - | - | |
| Seca1g01038 | 349 | Pfam | C2H2-type zinc finger | 219 | 242 | - | - | |
| Seca1g01038 | 349 | MobiDBLite | consensus disorder prediction | 255 | 292 | - | - | |
| Seca1g01038 | 349 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Seca1g01038 | 349 | Gene3D | Classic Zinc Finger | 216 | 322 | - | - | |
| Seca1g01038 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 219 | 246 | IPR013087 | - | |
| Seca1g01038 | 349 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 221 | 241 | IPR013087 | - | |
| Seca1g01038 | 349 | SMART | c2h2final6 | 300 | 322 | IPR013087 | - | |
| Seca1g01038 | 349 | SMART | c2h2final6 | 219 | 241 | IPR013087 | - | |
| Seca1g01038 | 349 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 302 | 322 | IPR013087 | - | |
| Seca1g01038 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 300 | 327 | IPR013087 | - | |
| Seca1g01038 | 349 | MobiDBLite | consensus disorder prediction | 15 | 33 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca1g01038 | Seca-Chr1 | 14399632 | 14400767 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca1g01038 | 1 | 348 | C2H2 Transcription Factor Family | AT1G26610 | 30.890 | 3.87e-29 | 115 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Seca1g01038 | zf-C2H2_6 | 1.7e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca1g01038 | - | - | aprc:113852386 | 368.237 |