Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01037 ATGAATCTGGATATGGCTTGTAGTTTGTCACAGTCAAAAATGTTAAACGGAGGTGTGGAGACAAGTTTCAGACACGGATCAGTTGGTCAAGTAGGTCGTTTTGATTTTAGAGGAAGAGGTTTTGGTTATGCATTTCTTGCCAACTCAAGAAATACTCTGAGATTGCGATTTAGTGGGATGAACAGAGTTAGTGGTGTTTCTTCTTGTTGGAATAATTCAAGAGTGGTTTCTGGTGGCGAGTTTAAAGTTTTGAATACAAAGAAAAGTATGTACTGTAAGAATAATAATCTTTTTATGGGGTCTAGAGTAATTTGGTCAAAGTGTCAGGGGAATGATTCTATAGCTTATGTTAATGGCAATGGCCGCAATGTTGATTATGTGGAAGGTTCAGGTGAGGATGTAGGGCTTGGGTCCGTTTCTAGTGCTGAACTGGATGCATCATCGGAAGAAAAGAAAGGGCAAGCTGGGACAGAAGGAGGGAGTGAAATAGGAGTAGAGGAACAAAGTGTGGATGAACTGAAAGAACTGTTGCAAAAGGCCTTGAAGGAACTAGAAGTTGCACAAATAAATAGTACTATGTTTGAGGAAAAGGTTAAAAAAATATCAGAGACTGCCATTTTTTTGCATGATGAAGCAGCACGTTCTTGGAATGATGTTAATTCTGCTCTTGACACCATTCAAGAAATTTCAAATGAAGAAGTTATGGCCAAAGAAGCTGTCCAAAATGCAACTATGGCTCTTTCATTAGCCGAGGCAAGGCTTCAAGTAGCCCTAGAATCTTTGGAGGTTGCAAAAGAAGTGCCTGATTCAGAGCAAGGTTCTAATAATGAGAGCAATGGTGATAAAGGCATAACGGAAGCAGAGAAAGCACTTTTCATTGCCCAAGAAGATATTAAGGAATGCCAGGCAAATTTAGCCAATTGTGAGGTCGAGCTGAGGCGCTTGCAAAATAGAAAGGAGGAGTTGCAGAAGGAAGTGAGCAAATTGCAAGAAGTTGCTGAAAAGGCACAGCTGAATGCAGTGAAAGCTGAGGAGGATGTTACAAACATAATGCTTTTAGCGGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACACAACGTGTAAATGATGCTGAGATTGCCTTACAGAGAGCAGATAAGTCTGTTTCTAATTTGAATGCTGATACCGCAGAAACTATTACAATTCAAGATGCTGAGCCTGTTCCTGAAGAGGAGAAAGTGGCTCAAGGTCTTTCTGGTGATGTCACTGTTGAAAGAGATAGAGATGTGGCAAATGATGATGAATCTTTGCTTGCCAAATTATCACCTGAAACACTATCTGATAAAACCAGCCAAGTCTCAGAAGACATTACACAGTCTGAATATTTGAGTGATAATGAGAATGCTGTACAAACAAAAAAGCAGGAAACACAGAAAGATTTGACTAGAGATAGTTCACCCTTTGCTCCCAAGGCATTACTAAAGAAGTCTTCTCGATTCTTTTCTGCATCATTCTTCTCTTTTACTGAAGATGAAGCTGAGTCCACACCGGCATCAGTTTTCCAAGGCCTCGTGTTATCTGCAAAGAAGCAGTTGCCCAAGCTTGTTCTTGGGTTGTTGTTAATGGGAGCAGGGGTTGCGTTCTATGCCAATAGGGCAGAGAGGAATTCTCAGCTGCTTCAACAGGCAGATGTTATTGTGACTAGTGTGGAAGAAGTTTCCTCTAGTGCAAAGCCTCTGGTTAGACGACTTCAGAAACTCCCTAAGAAAATTAAGAAAATCATTGCATCATTACCTCATCAAGAGGTGAATGAGGAAGAAGCTTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTTCCAATATTTCAAAAAATCCCTGGAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATTATTCGTCATGTTCATGGGACAAAAGCAATAGCCGAATTTGGAGTTGTTTTCCTTTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGACTTAGTTCGATGAAGAAATATGTTTTTGGATTAGGCTCTGCACAGGTTTTAGCAACTGCTGTAGTTGTTGGCTTGGTGGCTCATTATATTTGTGGCCAACCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCTACTGCTGTTGTCCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGCATGGACGAGCTACATTTTCTGTTTTACTTTTTCAGGATTTGGCTGTTGTCGTCTTATTAATCCTCATACCCCTAATTTCACCTAGTTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATATTCTCAGCCAATACACTCCTTGTTATTCTTGGGACTAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTATTCTTTATGACGGTAGGAATGTCAATCGATCCAAAACTTTTTGTTTCAAACTTCCCAGTCATTGCAGGGACATTGGGACTCTTAATATGCGGCAAGACTATCTTGGTTTCTTTGATGGGTAGAATCTTTGGGATTTCCCTTATTCCTGCCATTAGAGTTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTAGCCAGCTCTCGTCTTTGCTGTTTCTTGTTGTGGGGATTTCGATGGCTATCACGCCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGCATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACTGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTAGGCCAGATCATTGCGCAACTTCTTTCTGAGCGACTTATTCCGTTTGTTGCACTGGATGTGAGAGGTGATAGAGTGGCAATTGGGCGAGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCTTACATAAGATTGGGGCTGAAAGGGCATGTGCTGCAGCAATAACTTTAGATACACCTGGATCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGACGTTGATCATGGATTGAATTTGGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTGCTTGCTCAGGCTAAACTCCCCACATCAGAGATTGCAGCAACTATAAATGAATTCAGATGCCGTCATCTGGCTGAGCTCACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATATACTAGAATTATGAGCAAACCCAAGTCTCAATCCCCAGATTCATTGGACGAGACCCAAGTCTCTGAAGGGAAACTGGCAATATGA 3624 0.4263 MNLDMACSLSQSKMLNGGVETSFRHGSVGQVGRFDFRGRGFGYAFLANSRNTLRLRFSGMNRVSGVSSCWNNSRVVSGGEFKVLNTKKSMYCKNNNLFMGSRVIWSKCQGNDSIAYVNGNGRNVDYVEGSGEDVGLGSVSSAELDASSEEKKGQAGTEGGSEIGVEEQSVDELKELLQKALKELEVAQINSTMFEEKVKKISETAIFLHDEAARSWNDVNSALDTIQEISNEEVMAKEAVQNATMALSLAEARLQVALESLEVAKEVPDSEQGSNNESNGDKGITEAEKALFIAQEDIKECQANLANCEVELRRLQNRKEELQKEVSKLQEVAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEATQRVNDAEIALQRADKSVSNLNADTAETITIQDAEPVPEEEKVAQGLSGDVTVERDRDVANDDESLLAKLSPETLSDKTSQVSEDITQSEYLSDNENAVQTKKQETQKDLTRDSSPFAPKALLKKSSRFFSASFFSFTEDEAESTPASVFQGLVLSAKKQLPKLVLGLLLMGAGVAFYANRAERNSQLLQQADVIVTSVEEVSSSAKPLVRRLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVVVGLVAHYICGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPSSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLFVSNFPVIAGTLGLLICGKTILVSLMGRIFGISLIPAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRGDRVAIGRALDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGSNYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRCRHLAELTELCEASGSSLGYGYTRIMSKPKSQSPDSLDETQVSEGKLAI. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01037 1207 MobiDBLite consensus disorder prediction 137 165 - -
Seca1g01037 1207 Gene3D - 1007 1171 - -
Seca1g01037 1207 Pfam Sodium/hydrogen exchanger family 609 979 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca1g01037 1207 Pfam TrkA-N domain 1012 1125 IPR003148 GO:0006813
Seca1g01037 1207 Gene3D - 599 987 IPR038770 -
Seca1g01037 1207 MobiDBLite consensus disorder prediction 397 478 - -
Seca1g01037 1207 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 610 890 IPR004771 GO:0006812|GO:0008324|GO:0016020
Seca1g01037 1207 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 205 1197 - -
Seca1g01037 1207 Coils Coil 163 190 - -
Seca1g01037 1207 FunFam K(+) efflux antiporter 2 chloroplastic 1007 1171 - -
Seca1g01037 1207 ProSiteProfiles RCK N-terminal domain profile. 1011 1133 IPR003148 GO:0006813
Seca1g01037 1207 MobiDBLite consensus disorder prediction 436 464 - -
Seca1g01037 1207 Coils Coil 284 346 - -
Seca1g01037 1207 MobiDBLite consensus disorder prediction 1186 1207 - -
Seca1g01037 1207 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1008 1149 IPR036291 -
Seca1g01037 1207 Coils Coil 368 388 - -
Seca1g01037 1207 FunFam K(+) efflux antiporter 2 chloroplastic 599 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01037 Seca-Chr1 14370352 14391967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01037 92 1207 Inorganic Solute Cotransporters AT4G00630 70.449 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01037 K03455 - gmx:100798822 1847.79