Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01033 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAAATGCCGTCACTGCAAGGGATACCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCACACAGCGAAGTCTTCTGATAAAAATGAGCAGATGAATAGGACCCCAAGCAGACTCTCCTCCATGTTCAGTGGAACTCTTGACAAATGCTCAGTTTGCTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGTCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTTCTCTACTGCAGGCATCATTTTCAGCAGCTTTTCATGGAGAAGGGGAACTACCACCATGTACTCCAGGCTGCTGCAAACAAGAAGAATGCCACTCCACCACCTGAACCAGTTGATGATGAGCCACCAAAGCATGAAAAAGAAGAAGCAGAAACTAAGGAAGAAGAGAAAGAAGAAACTAAGGAGGAAGAGAAAGAAGAAAAGACTGAAACACATGAAACATGA 675 0.4326 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCRHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSDKNEQMNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANKKNATPPPEPVDDEPPKHEKEEAETKEEEKEETKEEEKEEKTETHET. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01033 224 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Seca1g01033 224 PANTHER OS06G0237300 PROTEIN 6 87 - -
Seca1g01033 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Seca1g01033 224 Gene3D Cysteine Rich Protein 102 170 - -
Seca1g01033 224 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Seca1g01033 224 Gene3D Cysteine Rich Protein 5 72 - -
Seca1g01033 224 MobiDBLite consensus disorder prediction 184 224 - -
Seca1g01033 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Seca1g01033 224 SMART lim_4 9 61 IPR001781 -
Seca1g01033 224 SMART lim_4 105 157 IPR001781 -
Seca1g01033 224 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Seca1g01033 224 FunFam LIM domain and actin-binding 1 100 170 - -
Seca1g01033 224 Coils Coil 195 224 - -
Seca1g01033 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Seca1g01033 224 Pfam LIM domain 10 65 IPR001781 -
Seca1g01033 224 Pfam LIM domain 106 161 IPR001781 -
Seca1g01033 224 FunFam LIM domain and actin-binding 1 4 74 - -
Seca1g01033 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Seca1g01033 224 MobiDBLite consensus disorder prediction 177 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01033 Seca-Chr1 14345701 14348108 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Seca1g01033 LIM 1.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01033 - - gmx:100779513 361.303