Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01031 ATGGGAAGGACACCATGTTGTGATAAGAAAGGTTTGAAGAAAGGACCATGGACACCTGAAGAGGATGAGATTCTTTCTAATTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCAAAGATGACAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTAAGGTGGACGAACTATCTCAGACCTGACATAAAACGTGGTTCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTAGGAAATAGGTGGGCTGTCATTGCCTCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAACTTTTGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCCAAAACCCACAAGCCAATGACCTCATTATCTGGTTACCCCACTGACAAGTCACATACATCTGTTTCCACACGCCACATGACTCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCTAGGCTCTCATGTGATTCATCACTCTTCAACAACAACAACAACCCTTCCTCTACCAAAACTGAATCTGACTTTTTCCTCCGCATATGGAACTCTGAAGTTGGAGATGCATTTAGAAATATTATTAGCAAAACCAGTTGCTGCCAGAGTCCCCTTTCTGCAGGATCATCTTCTAACAAATGTGACTCAGTTTCTGCTGTTACAGCAGAGTTGGTAACCAACCCATTAGGATCCTTAAACACAGCAAGCAAAATTGTGAAAGAAGAGATGGAGTGGAGGAACACAAAAACATGTGGTGAAGATGTTATACATAGGTCTGATTCATCAAGTTCTAATGACTTAGAAGACTCATCTGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCCCTTGGTTGTCAATTGTCCCCTTTAGTTTAG 936 0.4274 MGRTPCCDKKGLKKGPWTPEEDEILSNYIKKNGGHGSWRSLPKMTGLLRCGKSCRLRWTNYLRPDIKRGSFTPEEEKLVIQLHAILGNRWAVIASQLPGRTDNEIKNFWNTHLKKRLKSMGLDPKTHKPMTSLSGYPTDKSHTSVSTRHMTQWESARLEAEARLSCDSSLFNNNNNPSSTKTESDFFLRIWNSEVGDAFRNIISKTSCCQSPLSAGSSSNKCDSVSAVTAELVTNPLGSLNTASKIVKEEMEWRNTKTCGEDVIHRSDSSSSNDLEDSSDTALQLLLDFPINNDMSFLEGNSLGCQLSPLV. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01031 311 FunFam MYB transcription factor 69 130 - -
Seca1g01031 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Seca1g01031 311 FunFam Myb transcription factor 11 68 - -
Seca1g01031 311 Gene3D - 69 135 - -
Seca1g01031 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca1g01031 311 Gene3D - 11 68 - -
Seca1g01031 311 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca1g01031 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca1g01031 311 SMART sant 67 115 IPR001005 -
Seca1g01031 311 SMART sant 13 64 IPR001005 -
Seca1g01031 311 CDD SANT 16 62 IPR001005 -
Seca1g01031 311 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca1g01031 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca1g01031 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca1g01031 311 MobiDBLite consensus disorder prediction 121 145 - -
Seca1g01031 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca1g01031 311 MobiDBLite consensus disorder prediction 131 145 - -
Seca1g01031 311 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01031 Seca-Chr1 14287554 14290271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01031 1 301 MYB Transcription Factor Family AT3G61250 61.438 1.63e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g01031 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01031 K09422 - gmx:100816569 435.647