Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01030 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGGTTAGGGCGAGGTGGTGGTGGTTTGAACTCAAACCCTGGGTTTCAACCAAGGCCACATCAACAACAGTATGTGCAGAGGCACATGATGCAACATCAACATCCACAGCAGTACCAGCAGCATCAACAGAATCACCAGCACCAGCAGCAGCAGCAGCAACAACAACAACAATGGTTGAGAAGGACCCAGTTGGGTGGTACTGACACCAACGTTGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAATATTCCACCTCCTGATACACGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAACGAATTTGAGGATTACTTTCTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCGTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCCGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTCATGGTTACAACAGGTGGTACAAGCCTGAAAGATGATATTATGCGATTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAAATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAGTAGAGCAGCTAATTCAATTTCTTCCTTCAAACCGTCAGATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGATATCTTCGTAAGTCGTATGTTATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCCATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGATATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGAAATAGGGTTTTTCATGACTTTCGCAATGGTGCCTGCAGGAATCTGGTTTGCACTGATCTTTTCACTAGAGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGAAGATTTGGGCACCTTGGTTTGGCAGTGAATTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAACAAATCCCGCCACACATTGATCAGGCAATATATTGTAGGTGA 1503 0.4138 MNNRARYPPGIGLGRGGGGLNSNPGFQPRPHQQQYVQRHMMQHQHPQQYQQHQQNHQHQQQQQQQQQQWLRRTQLGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLNIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKNCSMLVMDEADKLLSPEFQPSVEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLRKSYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01030 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 497 IPR001650 -
Seca1g01030 500 Pfam DEAD/DEAH box helicase 151 315 IPR011545 GO:0003676|GO:0005524
Seca1g01030 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 327 IPR014001 -
Seca1g01030 500 SMART ultradead3 145 341 IPR014001 -
Seca1g01030 500 CDD DEADc_DDX6 128 328 - -
Seca1g01030 500 SMART helicmild6 377 458 IPR001650 -
Seca1g01030 500 FunFam ATP-dependent RNA helicase DDX6 107 330 - -
Seca1g01030 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 480 IPR027417 -
Seca1g01030 500 MobiDBLite consensus disorder prediction 25 70 - -
Seca1g01030 500 FunFam ATP-dependent RNA helicase DDX6 331 500 - -
Seca1g01030 500 Gene3D - 331 500 IPR027417 -
Seca1g01030 500 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 61 499 - -
Seca1g01030 500 MobiDBLite consensus disorder prediction 91 117 - -
Seca1g01030 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 273 281 IPR000629 -
Seca1g01030 500 MobiDBLite consensus disorder prediction 1 70 - -
Seca1g01030 500 Pfam Helicase conserved C-terminal domain 352 458 IPR001650 -
Seca1g01030 500 CDD SF2_C_DEAD 338 467 - -
Seca1g01030 500 Gene3D - 86 330 IPR027417 -
Seca1g01030 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01030 Seca-Chr1 14265675 14271251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01030 126 497 Eukaryotic Initiation Factors Gene Family AT3G19760 37.433 3.12e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01030 K12614 - tcc:18614173 872.463