Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01012 ATGGATCGTGGGGACCATATGGCGTTATCTGGGTCTGCACCTTACTATATGCAACAGAGAGGAATAGCTGGTTCTGGAGCACAACCTGAGTTACATGTTTCACATAGTATTCGTCCACTGTCTAATCCTAATCTACCATTTCAATCCAGCATTGGTGGTGGCACCATTGGATCTACATTACCCTTAGAATCTTCAGCAATTCAATCTCATGGTGTCAATGTGGGTGCTCCTACTGGGGCACCACTTGGGGAGCCTGTCAAAAGGAAAAGAGGAAGGCCTAGAAAATATGGGGCTGCTGATGGATCTGTGTCATTGGCATTGACTCCAACACCATCTACTCATCCTGGAACCATGACATCAGGCCAGAAACGCGGCAGAGGGCGTCCACCTGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTTACTTATTGCCAGGTGAATTGATGTCTAGTTCTGCTGGAATGGGATTCACTCCTCACATCATCAATATTGCAAGTGGAGAGGACATTGCAACAAAAATTATGGCATTTTCTCAGCTGGGGCCTAGAGCTATATGCGTTTTGTCAGCCAATGGTTCTGTCTCAACTGTCACACTTCGTCAACCTTCATCTTCAGGTGGCACTGTCACATATGAGGGGTCTTTCGAGATTTTGTGCATGTCAGGCTCTTACTTGCTTACAGAAAGTGGTGGTTCACGCAATCGAACTGGTGGACTAAGTGTTTCCCTTGCTAATCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGAGTGCTTATTGCATCAGGCCCTGTTCAGGTGATAGTTGGAAGCTTTCAATGGAGTGGATCAAGGACAAAGAACAAGAAAAAGGAAGGCTCAGATGGTGCAGAAGTTGGTGTGGAGTCAGATCATCAAGGAGTTCATAATCCAGTTGCACTGAATAGCATTTCATCAAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCTTGGTCGGTGTCGCGTCCGTTGGATATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1041 0.4621 MDRGDHMALSGSAPYYMQQRGIAGSGAQPELHVSHSIRPLSNPNLPFQSSIGGGTIGSTLPLESSAIQSHGVNVGAPTGAPLGEPVKRKRGRPRKYGAADGSVSLALTPTPSTHPGTMTSGQKRGRGRPPGTGKKQQLASLGYLLPGELMSSSAGMGFTPHIINIASGEDIATKIMAFSQLGPRAICVLSANGSVSTVTLRQPSSSGGTVTYEGSFEILCMSGSYLLTESGGSRNRTGGLSVSLANPDGRVIGGGVGGVLIASGPVQVIVGSFQWSGSRTKNKKKEGSDGAEVGVESDHQGVHNPVALNSISSNQNLTPTSSLSPWSVSRPLDMRNSHVDIDLMRG. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01012 346 MobiDBLite consensus disorder prediction 303 329 - -
Seca1g01012 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 274 IPR005175 -
Seca1g01012 346 MobiDBLite consensus disorder prediction 278 329 - -
Seca1g01012 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 277 - -
Seca1g01012 346 FunFam AT-hook motif nuclear-localized protein 1-like 160 290 - -
Seca1g01012 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 321 IPR039605 GO:0003680
Seca1g01012 346 MobiDBLite consensus disorder prediction 105 120 - -
Seca1g01012 346 CDD DUF296 159 273 IPR005175 -
Seca1g01012 346 Gene3D - 160 297 - -
Seca1g01012 346 MobiDBLite consensus disorder prediction 71 136 - -
Seca1g01012 346 ProSiteProfiles PPC domain profile profile. 154 294 IPR005175 -
Seca1g01012 346 MobiDBLite consensus disorder prediction 279 293 - -
Seca1g01012 346 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Seca1g01012 346 SMART AT_hook_2 87 99 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01012 Seca-Chr1 14161408 14166652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01012 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 47.383 2.62e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01012 - - gmx:100814615 553.903