Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g01008 ATGGGGATTGAGTGCTCCAGACTATTGCCATGTTGCGTGGATTCACAAGTTAAGGCATCAATTCTTGAAGTTCCAGATACTGAAAATGAGGATAGAATTGAGGCCAATGATGGGCCTGCATTTCGTGAATTTACGTTGGAGCAACTTAATAATGCAACATCTGGTTTTGCTGTTGAGAATATAGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGAAAGATGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGAAATGCTTGGCCTGATGCTCGGCAGTTTTTGGAGGAAGCTAGATCCGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGGCGATGAGAGGTTGCTTGTGGCCGAATATATGCCCAATGAAACACTAGCAAAACACCTTTTCCATTGGGAAACACAACCAATGAAATGGGCAATGCGACTCAGAGTTGTTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCCCTCTATCATGACCTTAATGCATATAGAGTTTTATTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGTCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACAAATTTGGCGTTTACCCCTCCAGAATATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCCCCTAGTCATGCCCTTGATTTGATTCGGGACAGAAATCTTCAGATGCTAACAGATTCTTGTTTGGAAGGACAATTCTCTGATGATGATGGAACAGAGTTGGTGCGCTTGGCATCTCGATGTTTACAGTATGAACCTAGGGAAAGGCCTAATCCAAAGTCATTAGTAGCAGCTTTGGCTCCTCTTCAGAAAGAAACAGAGGTGTGTCTACCATTATCATGTGATAGTAAAACATCACTTCCTGGTAGTAAGTTATTGATGGGTATCCCACATAGTGCTACAGTTGCTTCATTGTCCCCACTTGGTGAAGCATGTTCAAGAAAGGACTTGACCGCCATACATGAAGTTCTTGAAAATATTGGCTATAAAGATGATGAAGGAGTGACAAATGAGTTATCCTTCCAGATGTGGACTGATCAAATGCAGGACACACTAAATTGTAAGAAAAAAGGGGATGCTGCTTTCCGGCAGAAAGACTTTAGACTAGCAATTGAGTGCTATACACAGTTCATTGATGTTGGAACAATGGTTTCTCCAACTGTGCATGCGCGGCGCAGTTTGTGTTATCTCATTAGTGAGATGCCTCAGGAAGCACTGAGCGATGCAATGCAAGCCCAAGTAATTTCCCCTGTATGGCACATTGCATCTTATCTTCAATCTGTTTCCCTGGCTGGCCTTGGGATGGATAATGAAGCACAAATTGCACTTATAGAGGGAACAACACTGGAAGCCAAGCGAAATACACCTTCACAAAAGTGA 1512 0.4213 MGIECSRLLPCCVDSQVKASILEVPDTENEDRIEANDGPAFREFTLEQLNNATSGFAVENIVSEHGEKAPNVVYKGKMENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAEALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVCLPLSCDSKTSLPGSKLLMGIPHSATVASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNELSFQMWTDQMQDTLNCKKKGDAAFRQKDFRLAIECYTQFIDVGTMVSPTVHARRSLCYLISEMPQEALSDAMQAQVISPVWHIASYLQSVSLAGLGMDNEAQIALIEGTTLEAKRNTPSQK. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g01008 503 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Seca1g01008 503 FunFam probable serine/threonine-protein kinase At4g35230 393 502 - -
Seca1g01008 503 FunFam probable serine/threonine-protein kinase At5g41260 136 324 - -
Seca1g01008 503 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Seca1g01008 503 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g01008 503 Gene3D Transferase(Phosphotransferase) domain 1 136 322 - -
Seca1g01008 503 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Seca1g01008 503 SUPERFAMILY Protein kinase-like (PK-like) 40 316 IPR011009 -
Seca1g01008 503 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 498 IPR045845 GO:0004672|GO:0009742
Seca1g01008 503 SUPERFAMILY TPR-like 394 488 IPR011990 GO:0005515
Seca1g01008 503 Gene3D Tetratricopeptide repeat domain 393 503 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g01008 Seca-Chr1 14018734 14026861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g01008 29 313 Glycoside Hydrolase AT3G07070 33.227 1.13e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca1g01008 PK_Tyr_Ser-Thr 4.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g01008 K14500 - gmx:100781311 897.501