LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00991	ATGGCAACTGACATGCAGAGGTTTGTTGGAATGAGTGAGGATGATGAAGAAGAAATGGGAATGGGTGTGAAAGATGAGGATGATGATGATGATGATTATGAGGAAAATGGAGGTGAGCATGGAAATGCTCCAGGGATGGTACAGATTGATGGTGGGAATGGGATAGGAACTGGCACCGGGGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAACAGGCACTCCAGGTGGAGCTACTCGAAGATCTAGGCCGGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCTATCACTGCAAGGATCTTGGCAGGGCTTCGGAGGCATGGCAACTACAACCTTAGAGTTAGAGCTGACATCAATGATGTCATCGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCCTCAAGATCTCAGGGTCAAAGGCCAGCTGGTGGTAATTCTACAGCTGTCACTTCTTCATCTTCCCATGTACATTCACAACAGACTCCATCTGCTTCCCTCAAGGGAGCTGCTTCTGGCTATAGGAGCCCTTTAGAGCATAATGCATGTCAAGTGAAAGGTGTTTTTATGCCAGCTCCATCTCCTTATGATCTATCCTCAAGTTCGCGGTCTCAAACATCTATGGTGGGGGACGGCGAAACACAAAGAGACAATAATCCTGTGATTGGTGGTTCTATGGATGGTGTTGATGAGAAGCAGATTGTTGAAATGCCCCCCAGATTACAGGAGCGTGATTTTGCTGGTACCCCATATGTTCCAGTTTACGTGATGCTACCATTGGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCGGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGTAAATGTTGATGGTGTTATGGTTGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCGCAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGTGAGCTTAAGCTTAAGCTGCAGGTTGTGATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCATTACCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAAGGAAGACACAACCCTGAATGTCTTACCTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGGACTGCATTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTCATCTCCATGATTGAAGTTGGACTAGGTCCATGTGGAGAACTAAGATACCCATCTTGTCCTGTGAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGGCACTCTATTTGGGCGAGAGGGCCAGATAATGCGGGTACCTATAACTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTACTTGATCATGGAAATCGGGTACTTTCTCTGGCTAAGTTAGCTTTTGAGGGATCCTGTATTGCTGCAAAGGTAAGTTAA	1653	0.4531	MATDMQRFVGMSEDDEEEMGMGVKDEDDDDDDYEENGGEHGNAPGMVQIDGGNGIGTGTGDNRFQQHQQFQEQTGTPGGATRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQRPAGGNSTAVTSSSSHVHSQQTPSASLKGAASGYRSPLEHNACQVKGVFMPAPSPYDLSSSSRSQTSMVGDGETQRDNNPVIGGSMDGVDEKQIVEMPPRLQERDFAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVNVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLTWGIDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDGFISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEVRGHSIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLLDHGNRVLSLAKLAFEGSCIAAKVS.	551

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	83	98	-	-
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	58	80	-	-
	Seca1g00991	550	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	211	550	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	209	235	-	-
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	1	98	-	-
	Seca1g00991	550	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	436	458	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	509	528	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	300	314	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	321	339	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	343	364	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	208	241	-	-
	Seca1g00991	550	Pfam	Glycosyl hydrolase family 14	269	549	IPR001554	GO:0000272\|GO:0016161
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	15	36	-	-
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	147	187	-	-
	Seca1g00991	550	Gene3D	Glycosidases	257	550	-	-
	Seca1g00991	550	MobiDBLite	consensus disorder prediction	147	183	-	-
	Seca1g00991	550	Pfam	BES1/BZR1 plant transcription factor, N-terminal	81	222	IPR008540	-
	Seca1g00991	550	SUPERFAMILY	(Trans)glycosidases	260	550	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00991	Seca-Chr1	13705313	13711499	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00991	1	549	Glycoside Hydrolase	AT2G45880	67.754	0.0	763

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Seca1g00991		Glyco_hydro_14	5.4e-79	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00991	K01177		-	gmx:100805560	922.154