Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00979 ATGCCAATGGCAAAGAGGTCCCAAAGATTCCCTGTGCAGTATGAGAAAGATCAGTCGGGTTGTATGTGGGGTTTTATTAGTATATTTGATTTTCGCCATGGCCGCTTCACTCGGAAGTTGATCGCAGATAGGAGGCACAGCAGCAAGCATGCTGTTGGTTCTATACTTACCAAGAACAAATTTGAGACGTTGAGCAATTTGGATGAAGAATATCAAGGAAATTTTGACAGAGGAGAGAGTAAGAGGTTAACAGTGACAACTGATGCTGATAAGCTTAGTGTGAAGAAACTTATAGAAGAAGAGATGTTCATTGATCAGGATGACATGAAGGATCAAGGTAATGTTGAAGTAGAATCAAAGCGATCCAGCTTAGGGCGTGAAGACTCCTTGAAGAAAGATTCCAAAAGAAAAAAGAAATCTCGCAAGAAGAGCCGTGATATGGACACGCATGATTCGAATGTGACCTCTGAATTCTCACATAATCAGCATTCAAAGCAACAATCAAAAGATAATCTTGATTTGGACAAGATAATGGAAGATTTTTGTCATATCGAAGCTGTTTGTTCCATGATGCATGGCAATGATGGCAAAGTTAATGCACAATCAAACCAAAAGCATGTTATTTCTGAAGACCTTGCAAGAGATGCAGTCCATGAATTTGTGAATCAGATGGTATCAAATGGGAAAGATGTGGTAGAAGATAGAAACTTCCTTTGCTCACATGAACTTGTGGAAGCACTTCAGGTTATAAGCTCAGATAAGGAATTGTTTCTTAGACTTCTACAAGATCCAAATTCACACTTACTGAAATATATTCAGGAGTTGGAGAATGCTCAGGGGAGAAGAGACAAAGCATACAGTTCAGTTACTGGCTCCAACTTCTCTGAACAAGACCTTGACAATCTGAAACAAACTAGGGAGATTGTCAGCCACAAGCATCGTAACTTTTTCAGGAAAAAGGTAAAGTCTCAATCAAAAGGTCCAACAAATAATGATGGGAAAACTGAGTTTTCAAATAGAATTGTCATTCTGAAACCTGCACTAATGGGCATGCAAAATTCTGAAAGTGAAAACAACCTTGCCTCATCACTAGATTCTCAAGATATTGTCCATTACAAAGGTCCTTCAGTGCGAGTTAGTTCACATTTTTCTCTTACAGAGATAAAAAAGAAACTAAAACATGCTATGGGAAAGGAGAGACATAGAAACCCTGAACGTCAAAATATGGGGCCAGGAGGCAATGCCATTGGTAAAGATAATGTTGGAATGAGATCTCCTAATAAAGATCATTTCTTCATTGAAAAAATTGCAAGACCTATGTTTGATGTTATGAAAGGAAACAAGACCAGTGCATTGAAAGACTCTGAATTTAATTTGGATCATGAAAGTGGTACTCCCAAAGAAAGGGTTTCTAACATATATATTGAGGCTAAGAAACATCTCTGTGAGATGCTAGAAAATGGAGATGACAACATAAACATTTCAAGCAGCCAGATACCCAAAACCCTTGGGAGAATACTATCTCTTCCTGAGTACAACTTTTCTCCTCTTGGAAGTCCTGGACGAAATTTGGAGCATCATTTTGTGACTGCACAGGCAAGATTTTCTACTTCAGATAAAACTTGTGAGCTTAATGAGGATAATTTGTCTCCCAAACAAGCAGCCTCTATTAGTCATCTGGATCAGGAAACAAACAATTCAGAGAACCAATCAAGCATTTATGATGAAAGCTCTAATAATGAAGTACTTGAAATTAAGTCTGAGTCAACTCTCTCTCATGATCTTGGTCATGTTGATACTGTTGAAGCCTGCTACCCTGTTAGAGATGAGATAGTTACTGAAGGTAATTTAGAATCTACAAGAGAGATAAATGTTTTGGAATTTTCCTCGGATCCAATTGACTTCACTGCAGGGAAGGACCAGAATCATGATATCTCAGAAATTCCTGATGGTGCTAGATGTTCTGAATCTGAATGTTCAAATGAGATTCTTTTGCAGGATGTAACAGAAGACAACCAACCATCATCTCCACCGTCATCCCCTCCTCACTCTTCCATCACTAAGAAAATTGAAGAGCTAGAAAGTAGTGCAGATGTATCTGGGCGACCGAGTCCTGTATCTGTACTCGATATACCATTATCAGATGATGACTTCAGTCCTGGGTACTCCAGATGTCAACCTGTTAAATTACCAGTACAACCACTACAAATTCAATTTGAAGAACACGACTCTTCGCCTGTGGATCAATTTGATAGAGGAAGATATCGTGTTGAAGAAAATGAATTGATATATGACTACATTAATGCTGTCTTGCACGCCTCCGGCTTGACTAGGGATCAATTGTTGATGAAATGCCTTTCCTCAGACAACATACTAGATCCTTCCCTGTTTGATCAGGTACAGTTCTTCTCAAACCTGCTTTGCCATGATCAGAAGATCCTATTCGACTGTATCAACGAAGTTCTCATGGAGGTTTGTTGGTATTACTTTGGGGTCTCACCTTGGGTATCATTTGTAAATCCTAGCATAAGGCCAACTCCAAATATGAAAAAGGTCATTGTTAAGGTGTGGGAAGGAGTGTGCTGGCATGTCCTTCCCTTACCCCCACCACATACTTTGGAGCAAATTGTTAGGAAAGACATGGCAAGAAGGGGAACATGGATGGACCTTCAACTTGATGTTGAAACAGTTGGTTGTGAAATGGGTGATGCCATTCTTGCAGAACTGATGGAAGATACAATTTTGAGCCTTGTGAGTGAAAGTACAGAAAGCAAATGTTCCCTGCTTCAATTTGAATTGAAGGACAATGAGAGCAACATTAACTTGTAA 2829 0.3924 MPMAKRSQRFPVQYEKDQSGCMWGFISIFDFRHGRFTRKLIADRRHSSKHAVGSILTKNKFETLSNLDEEYQGNFDRGESKRLTVTTDADKLSVKKLIEEEMFIDQDDMKDQGNVEVESKRSSLGREDSLKKDSKRKKKSRKKSRDMDTHDSNVTSEFSHNQHSKQQSKDNLDLDKIMEDFCHIEAVCSMMHGNDGKVNAQSNQKHVISEDLARDAVHEFVNQMVSNGKDVVEDRNFLCSHELVEALQVISSDKELFLRLLQDPNSHLLKYIQELENAQGRRDKAYSSVTGSNFSEQDLDNLKQTREIVSHKHRNFFRKKVKSQSKGPTNNDGKTEFSNRIVILKPALMGMQNSESENNLASSLDSQDIVHYKGPSVRVSSHFSLTEIKKKLKHAMGKERHRNPERQNMGPGGNAIGKDNVGMRSPNKDHFFIEKIARPMFDVMKGNKTSALKDSEFNLDHESGTPKERVSNIYIEAKKHLCEMLENGDDNINISSSQIPKTLGRILSLPEYNFSPLGSPGRNLEHHFVTAQARFSTSDKTCELNEDNLSPKQAASISHLDQETNNSENQSSIYDESSNNEVLEIKSESTLSHDLGHVDTVEACYPVRDEIVTEGNLESTREINVLEFSSDPIDFTAGKDQNHDISEIPDGARCSESECSNEILLQDVTEDNQPSSPPSSPPHSSITKKIEELESSADVSGRPSPVSVLDIPLSDDDFSPGYSRCQPVKLPVQPLQIQFEEHDSSPVDQFDRGRYRVEENELIYDYINAVLHASGLTRDQLLMKCLSSDNILDPSLFDQVQFFSNLLCHDQKILFDCINEVLMEVCWYYFGVSPWVSFVNPSIRPTPNMKKVIVKVWEGVCWHVLPLPPPHTLEQIVRKDMARRGTWMDLQLDVETVGCEMGDAILAELMEDTILSLVSESTESKCSLLQFELKDNESNINL. 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00979 942 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 3 917 - -
Seca1g00979 942 MobiDBLite consensus disorder prediction 394 423 - -
Seca1g00979 942 MobiDBLite consensus disorder prediction 109 134 - -
Seca1g00979 942 Pfam Domain of unknown function (DUF4378) 765 912 IPR025486 -
Seca1g00979 942 MobiDBLite consensus disorder prediction 109 170 - -
Seca1g00979 942 MobiDBLite consensus disorder prediction 557 578 - -
Seca1g00979 942 Pfam Protein of unknown function (DUF3741) 222 266 IPR022212 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00979 Seca-Chr1 13568675 13574296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00979 3 900 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 33.552 2.63e-111 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00979 - - gmx:100783243 1353.19