Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00977 ATGGCTGTGGTGAGTCCTGTGCCTGCAACAACACAGAGGACCCGTTCTATGGGTTCGGTTCGTGAAATTGGGGGAGAAATTGTTGAGGAACCTAATCCAGCTGTGGTTGATGAGCCAATCTATGTTGCTGTGGCAAAGGATGTAAAAGAGAGCAAATTGAATCTAATATGGGCAATACAGAACTCTGGAGGAAAGAGGATCTGCATCCTCTATGTTCATGTGCCTGCAACAATGATCCCTTTAATGGGTGCTAAATTCCCTGCAAGTTCATTGAAAGAGCAGGAAGTCCGAGCATTCCGGGAAATTGAAAGGCAAGACATGCACAAGACTCTGGATGAATATCTTCGTATCTGTCAACGGATGGGGGTTCGAGCAGAGAAACTGCATATTGAAATGGATAGCATTGAAAAAGGAATTATAGAACTCATCTCCCAGCATGGCATCCGAAAGCTTGTTATGGGAGCAGCATCTGATAAATGCTATTCTAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATCTATGTACGTGAACAAGCTCCGGCTTCTTGTCATATACAGTTTATCTGCAAAGGACACCTTATACACACAAGGGATCGCAGTTTGGGTGAACGTAATGCAGAGGTTGCATCTCCTTTGGTGCACCAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCTATTACACTGGGGCAAAATCATTGGGAAAATTCAACTAATCATGCTCAAGAGTTATTTCGCAGAGTAAGGTCTGCCAATGATGGACTTGGAGCAAGCACTGTGGCTGCTTCTTCTCCAGATGACACTGAAGGGTTTTCAACTCCACGTAACAGGATGGGTGCAGAAGTAAGTTCTGATGAATCAGATAGGCAGTCAAGGATGAGTCCTTCAGGTTTGTCAACATACTCTGATGGTGCAGTTGAACCAGCATTGACCCCAAATTTGATTACTGAGAGCAGTGAGAATGCATTAGACTTGACTTTGAGTCGCCTGATAATTAAAGAGGATCTTCGCCATTCATCTCCTCCTAGTGTACTGGATGGTGGAATGAATGATACTCTCTATGACCAGCTCGAACAGGCTATGGCTGAGGCTGAGAATGCTACACGAAATGCATACCAAGAAACTTGTAGGCGTGGGAAAGCTGAGAAAGATGCCATTGAAGCTATACGCAGGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACCTGAGGAAAATGGCAGAGGAAGAACTAAGAAAAGAAAAAGAAGAACTTGAGAATATGACGATCCAGAGAGACAGTGTTAAGGAAGAACTCCGACTAGCCCTAGAACAGAAGTTATCACTAGAGAGTCAAATTGCATCATCTGAACTTATGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGACCTGTTACAAAGCTACAAGAATGAGCGAGATGAATTGCAGTTGCAGCGTGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCGAGCACCCATGTGCCTCAATTGTTCTCAGAATTCTCATTTTTTGAGATTGAAGAAGCAACACGGAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTCCTGCGTCACACTGAGGTAGCTATAAAAATGTTGCATGCCAACAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTATTGAGCAAGCTAAGGCATCCCAATCTTATCACACTTATAGGGGCCTGCCCTGAATCCTGGTCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGACCGTCTTGCCTGCAAGGATAACACACCTCCTTTATCATGGCAAACTCGGATTCGCATTTCTGCAGAACTGTGTTCTGCTCTCATCTTTCTCCACTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCAAATATTCTCTTAGATGCAAACCTCATTAGCAAGCTTAGCGACTTTGGAATCTGTCGAATACTATCTCATTATGAGAGTTCTAGTAATAACACTACACAGTTTTGGAAAACTGACCCGAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCAGATGTCTATTCATTCGGAATCATACTATTGAGATTGTTGACCGGGAGACCAGCCCTGGGAATAACTAAGGAAGTGAAATATGCAGTAGATACTGGAAAGTTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAAGCTGAACAGTTGGCTCGCTTAGCTTTGAGGTGTTGTGAGATGAATAGGAAGAGCCGGCCAGATCTTTATTCAGATGTATGGAGGATACTTGATGCAATGAGAGCTTCTACTGGAGGCACAAACTCCTTTGGATTAAGTTCTGAAGGGCTTCACCATCCTCCTTCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATAAGAGGATGGCTTGATAGTGGTCATGACACATCACCAATGACAAATAGTAAGCTTGCACATCAGAATCTTGTTCCGAATCGCGCTCTTCGCTCTGCAATCCAAGACTGGCTTCAAAGTCATTGA 2655 0.4358 MAVVSPVPATTQRTRSMGSVREIGGEIVEEPNPAVVDEPIYVAVAKDVKESKLNLIWAIQNSGGKRICILYVHVPATMIPLMGAKFPASSLKEQEVRAFREIERQDMHKTLDEYLRICQRMGVRAEKLHIEMDSIEKGIIELISQHGIRKLVMGAASDKCYSRRMMDLRSKKAIYVREQAPASCHIQFICKGHLIHTRDRSLGERNAEVASPLVHQVPNSVRSLRSQSITLGQNHWENSTNHAQELFRRVRSANDGLGASTVAASSPDDTEGFSTPRNRMGAEVSSDESDRQSRMSPSGLSTYSDGAVEPALTPNLITESSENALDLTLSRLIIKEDLRHSSPPSVLDGGMNDTLYDQLEQAMAEAENATRNAYQETCRRGKAEKDAIEAIRRAKASESLYTEELNLRKMAEEELRKEKEELENMTIQRDSVKEELRLALEQKLSLESQIASSELMIKELEQKIISAVDLLQSYKNERDELQLQRDNALREAEELRKKQGEASSTHVPQLFSEFSFFEIEEATRNFDPSLKIGEGGYGSIFKGVLRHTEVAIKMLHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRISAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSHYESSSNNTTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLYSDVWRILDAMRASTGGTNSFGLSSEGLHHPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSKLAHQNLVPNRALRSAIQDWLQSH. 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00977 884 SUPERFAMILY RING/U-box 808 883 - -
Seca1g00977 884 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 157 - -
Seca1g00977 884 CDD RING-Ubox_WDSUB1-like 815 870 - -
Seca1g00977 884 SUPERFAMILY Protein kinase-like (PK-like) 503 784 IPR011009 -
Seca1g00977 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 884 IPR013083 -
Seca1g00977 884 Gene3D Transferase(Phosphotransferase) domain 1 599 803 - -
Seca1g00977 884 Gene3D HUPs 40 174 IPR014729 -
Seca1g00977 884 Coils Coil 401 498 - -
Seca1g00977 884 CDD STK_N 39 192 - -
Seca1g00977 884 MobiDBLite consensus disorder prediction 258 307 - -
Seca1g00977 884 ProSiteProfiles Protein kinase domain profile. 526 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00977 884 FunFam receptor-like protein kinase FERONIA 489 598 - -
Seca1g00977 884 Pfam U-box domain 815 884 IPR003613 GO:0004842|GO:0016567
Seca1g00977 884 ProSitePatterns Protein kinases ATP-binding region signature. 532 553 IPR017441 GO:0005524
Seca1g00977 884 Coils Coil 352 376 - -
Seca1g00977 884 ProSiteProfiles U-box domain profile. 813 884 IPR003613 GO:0004842|GO:0016567
Seca1g00977 884 SMART Ubox_2 817 880 IPR003613 GO:0004842|GO:0016567
Seca1g00977 884 PANTHER OS02G0152300 PROTEIN 40 879 - -
Seca1g00977 884 MobiDBLite consensus disorder prediction 258 273 - -
Seca1g00977 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Seca1g00977 884 Pfam Protein kinase domain 531 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00977 884 SMART serkin_6 526 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00977 884 Gene3D Phosphorylase Kinase; domain 1 495 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00977 Seca-Chr1 13487930 13494726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00977 1 884 U-box Gene Family AT2G45910 55.145 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca1g00977 Pkinase 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00977 - - gmx:100807515 1470.29