Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00973 ATGGATAAAGATGAAGCCCCACAAATCCCCCGAAGAACGACCAGGTCTTCAGCATCATGTTCAGCATCCACTTCAAATAATGTACCTGCAGCAAAAGTGAATAGCCCTGAACCTCTAACAGTTAATGACCTTTTAGTTGGAGGAGGCCCCATTAGCCTAGATGGTATAATTTCCAGTTTTTCTGGTAGAAGAAGCCAGATTCTTGAGATTGTGCGTTTTTTGGGTCCTTTGAATTCACCAATGCCTCCTTTGTTTGTATATGGAGATGCATCTACTGGAAAAAGCAGTATCATTCTTCAATTATTCAGGCATCTAAACAGACCTCTTGTTTATTCTAGTTGTAGGACATGTTATAACCAACGTATCTTGTTTGAGTCTATACTAAATCAGTTACTTCTCCATAGAAAAAACTCTTCCAATGGTTATTCAAATGCAAAGCGCTGTGAAAGACCATCTGATTTTGTCAATTTTCTTCGGGAAGCATTGACCAATGTTATAAACAATCTGAAGGAGAATTCGGAGAAGTTGATCTCAAATAATATGGTACATGGGGGAATTGGAAATATGATCTACTTGGTATTTGACAATTTTCATCTTGTTAGGGAATGGGATAAGAGCTCTACTATAGTTCCCTTTCTTTTTAATCTCCATGATCTGCTAAAGATGCCTGAGGTGGGTTTGATTTTTATCAGCAGTACATCCCCAGATACCTTTTACACTAACATGGGTTATGTGGAGCCTATCCCCATTTACTTTCCTGATTACACAGAAGGTGATATTCGTCAAATATTATTGAGAAATGAAGCGAACCAGAAGTTGTATTCCTCATTTCTGGATGTAGCTCTGAGGCCTTTCTGTAGAATTACCAGGCAGGTTGGTGAATTGTCCACCTCCTTAAAACCACTATTTGAAAAATACTGTGAACCTTTAAGTGATAAGGGAGTTGCTCCCAGTGAAGACATGAAGCGAAGACTATTCAATCATATCAAGCCTCATATTGCCTCCTCTCTGAAAGAGATATTTAAGGTTTCATCTCCTCCTTCAACTGAAGTTGAGACTTGTAAAGAGACAAAGTGGAAGGGGAATTCCAAGAGATTGGAGAAATCTGAAGAAATTGGTGATCTAGATTTTCATATGTCTACTAGTGCAAAGTATCTTCTTATTTCAGCATTTCTTGCCTCAAGAAACCCAGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGCTCTGATAATCGAAAGCGAAAGAGGAAGCCCTCTGAGAAAGTTCTGGAACAGAAGGAAAGTTTAGAAGAGGAATTACTAATGAAAGGACCTGGAACTTACCCATTGGAGAGGTTGTTAGCCATCTTTCAATGTATTGTATCAGTTGCAGAAGAGCCATGTGATGAGGAGGAACAAAACAATGATGGATTAGGACTTCAATGTGGCAATGTTGGACTGATGTCTGACATTCTTTTGCAGCTATCCAGTCTCTGCAATGCTAATTTTATATTCAAAGGAAAAAGCTGTCCAATAGAAGGCTCAACTCGATATCGATCAACTATATCTGAAGACATGGCTTTGAAGGTAACATTTTTGTATCACTTAATACTCCCACAAATTTCTTAG 1614 0.386 MDKDEAPQIPRRTTRSSASCSASTSNNVPAAKVNSPEPLTVNDLLVGGGPISLDGIISSFSGRRSQILEIVRFLGPLNSPMPPLFVYGDASTGKSSIILQLFRHLNRPLVYSSCRTCYNQRILFESILNQLLLHRKNSSNGYSNAKRCERPSDFVNFLREALTNVINNLKENSEKLISNNMVHGGIGNMIYLVFDNFHLVREWDKSSTIVPFLFNLHDLLKMPEVGLIFISSTSPDTFYTNMGYVEPIPIYFPDYTEGDIRQILLRNEANQKLYSSFLDVALRPFCRITRQVGELSTSLKPLFEKYCEPLSDKGVAPSEDMKRRLFNHIKPHIASSLKEIFKVSSPPSTEVETCKETKWKGNSKRLEKSEEIGDLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKVLEQKESLEEELLMKGPGTYPLERLLAIFQCIVSVAEEPCDEEEQNNDGLGLQCGNVGLMSDILLQLSSLCNANFIFKGKSCPIEGSTRYRSTISEDMALKVTFLYHLILPQIS. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00973 537 Pfam AAA ATPase domain 60 217 IPR041664 -
Seca1g00973 537 Gene3D - 60 240 IPR027417 -
Seca1g00973 537 MobiDBLite consensus disorder prediction 408 425 - -
Seca1g00973 537 FunFam Origin of replication complex subunit 5 60 241 - -
Seca1g00973 537 MobiDBLite consensus disorder prediction 1 34 - -
Seca1g00973 537 MobiDBLite consensus disorder prediction 11 33 - -
Seca1g00973 537 Coils Coil 159 179 - -
Seca1g00973 537 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 52 525 IPR020796 GO:0000808|GO:0005634|GO:0006260
Seca1g00973 537 MobiDBLite consensus disorder prediction 403 425 - -
Seca1g00973 537 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 525 IPR047088 -
Seca1g00973 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00973 Seca-Chr1 13423368 13428107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00973 3 526 Core DNA Replication Machinery Family AT4G29910 58.476 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00973 K02607 - gmx:100782175 843.958